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TopResidualDebugOutput Class Reference

A class for producing various debug related outputs. More...

#include <TopResidualDebugOutput.h>

Inheritance diagram for TopResidualDebugOutput:
[legend]

Public Member Functions

 TopResidualDebugOutput (const InputParameters &parameters)
 Class constructor. More...
 
virtual Real time () override
 Get the output time. More...
 
virtual Real timeOld ()
 Get the old output time. More...
 
virtual Real dt ()
 Get the current time step size. More...
 
virtual Real dtOld ()
 Get old time step size. More...
 
virtual int timeStep ()
 Get the current time step. More...
 
const unsigned int & interval () const
 Get the output interval. More...
 
const MultiMooseEnumexecuteOn () const
 Get the current 'execute_on' selections for display. More...
 
bool isAdvanced ()
 Returns true if this object is an AdvancedOutput object. More...
 
virtual const OutputOnWarehouseadvancedExecuteOn () const
 Returns the advanced 'execute_on' settings. More...
 
void allowOutput (bool state)
 Method for controlling the allow output state. More...
 
virtual void outputStep (const ExecFlagType &type)
 A single call to this function should output all the necessary data for a single timestep. More...
 
const std::string & name () const
 Get the name of the object. More...
 
const InputParametersparameters () const
 Get the parameters of the object. More...
 
template<typename T >
const T & getParam (const std::string &name) const
 Retrieve a parameter for the object. More...
 
bool isParamValid (const std::string &name) const
 Test if the supplied parameter is valid. More...
 
MooseAppgetMooseApp ()
 Get the MooseApp this object is associated with. More...
 
virtual bool enabled ()
 Return the enabled status of the object. More...
 
template<typename... Args>
void mooseError (Args &&...args) const
 
template<typename... Args>
void mooseWarning (Args &&...args) const
 
template<typename... Args>
void mooseDeprecated (Args &&...args) const
 
template<typename... Args>
void mooseInfo (Args &&...args) const
 
virtual void meshChanged ()
 Called on this object when the mesh changes. More...
 
virtual void timestepSetup ()
 Gets called at the beginning of the timestep before this object is asked to do its job. More...
 
virtual void jacobianSetup ()
 Gets called just before the Jacobian is computed and before this object is asked to do its job. More...
 
virtual void residualSetup ()
 Gets called just before the residual is computed and before this object is asked to do its job. More...
 
virtual void subdomainSetup ()
 Gets called when the subdomain changes (i.e. More...
 
virtual const std::vector< ExecFlagType > & execFlags () const
 Get the execution flag for the object. More...
 
ExecFlagType execBitFlags () const
 Build and return the execution flags as a bitfield. More...
 

Static Public Member Functions

static MultiMooseEnum getExecuteOptions (std::string default_type="")
 Return the support output execution times. More...
 
static MultiMooseEnum getExecuteOptions ()
 Returns the available options for the 'execute_on' input parameters. More...
 
static void addDeprecatedInputParameters (InputParameters &params)
 A static helper for injecting deprecated parameters. More...
 

Public Attributes

const ConsoleStream _console
 An instance of helper class to write streams to the Console objects. More...
 

Protected Member Functions

virtual void output (const ExecFlagType &type) override
 Perform the debugging output. More...
 
void printTopResiduals (const NumericVector< Number > &residual, unsigned int n)
 Prints the n top residuals for the variables in the system. More...
 
virtual bool shouldOutput (const ExecFlagType &type)
 Handles logic for determining if a step should be output. More...
 
virtual bool onInterval ()
 Returns true if the output interval is satisfied. More...
 
virtual void initialSetup ()
 Initialization method. More...
 
template<typename T >
T & declareRestartableData (std::string data_name)
 Declare a piece of data as "restartable". More...
 
template<typename T >
T & declareRestartableData (std::string data_name, const T &init_value)
 Declare a piece of data as "restartable" and initialize it. More...
 
template<typename T >
T & declareRestartableDataWithContext (std::string data_name, void *context)
 Declare a piece of data as "restartable". More...
 
template<typename T >
T & declareRestartableDataWithContext (std::string data_name, const T &init_value, void *context)
 Declare a piece of data as "restartable" and initialize it. More...
 

Static Protected Member Functions

static bool sortTopResidualData (TopResidualDebugOutputTopResidualData i, TopResidualDebugOutputTopResidualData j)
 Method for sorting the residuals data from TopResidualDebugOutputTopResidualData structs. More...
 

Protected Attributes

unsigned int _num_residuals
 Number of residuals to display. More...
 
System & _sys
 Reference to libMesh system. More...
 
Real _norm
 Current norm returned from PETSc. More...
 
PetscInt _nonlinear_iter
 Current non-linear iteration returned from PETSc. More...
 
PetscInt _linear_iter
 Current linear iteration returned from PETSc. More...
 
FEProblemBase_problem_ptr
 Pointer the the FEProblemBase object for output object (use this) More...
 
bool _transient
 Transient flag (true = transient) More...
 
bool _use_displaced
 Flag for using displaced mesh. More...
 
EquationSystems * _es_ptr
 Reference the the libMesh::EquationSystems object that contains the data. More...
 
bool _sequence
 Flag for forcing call to outputSetup() with every call to output() (restartable) More...
 
MultiMooseEnum _execute_on
 The common Execution types; this is used as the default execution type for everything except system information and input. More...
 
Real & _time
 The current time for output purposes. More...
 
Real & _time_old
 The old time. More...
 
int & _t_step
 The current time step. More...
 
Real & _dt
 Time step delta. More...
 
Real & _dt_old
 Old time step delta. More...
 
unsigned int _num
 The number of outputs written. More...
 
const unsigned int _interval
 The output time step interval. More...
 
std::set< Real > _sync_times
 Sync times for this outputter. More...
 
Real _start_time
 Start outputting time. More...
 
Real _end_time
 End outputting time. More...
 
Real _t_tol
 Time checking tolerance. More...
 
bool _sync_only
 Flag for only executing at sync times. More...
 
bool _initialized
 True if init() has been called. More...
 
bool _allow_output
 Flag for disabling output. More...
 
bool _is_advanced
 Flag for advanced output testing. More...
 
OutputOnWarehouse _advanced_execute_on
 Storage for the individual component execute flags. More...
 
MooseApp_app
 The MooseApp this object is associated with. More...
 
const InputParameters_pars
 Parameters of this object, references the InputParameters stored in the InputParametersWarehouse. More...
 
const std::string & _name
 The name of this object, reference to value stored in InputParameters. More...
 
const bool & _enabled
 Reference to the "enable" InputParaemters, used by Controls for toggling on/off MooseObjects. More...
 
FEProblemBase_mci_feproblem
 Reference to FEProblemBase instance. More...
 
std::vector< ExecFlagType_exec_flags
 execution flag (when is the object executed/evaluated) More...
 
const ExecFlagType_current_execute_flag
 Reference to FEProblemBase. More...
 

Detailed Description

A class for producing various debug related outputs.

This class may be used from inside the [Outputs] block or via the [Debug] block (preferred)

Definition at line 56 of file TopResidualDebugOutput.h.

Constructor & Destructor Documentation

TopResidualDebugOutput::TopResidualDebugOutput ( const InputParameters parameters)

Class constructor.

Parameters
parametersObject input parameters

Definition at line 43 of file TopResidualDebugOutput.C.

44  : PetscOutput(parameters),
45  _num_residuals(getParam<unsigned int>("num_residuals")),
47 {
48 }
NonlinearSystemBase & getNonlinearSystemBase()
System & _sys
Reference to libMesh system.
FEProblemBase * _problem_ptr
Pointer the the FEProblemBase object for output object (use this)
Definition: Output.h:171
PetscOutput(const InputParameters &parameters)
Class constructor.
Definition: PetscOutput.C:85
virtual System & system() override
Get the reference to the libMesh system.
unsigned int _num_residuals
Number of residuals to display.

Member Function Documentation

static void Output::addDeprecatedInputParameters ( InputParameters params)
staticinherited

A static helper for injecting deprecated parameters.

const OutputOnWarehouse & Output::advancedExecuteOn ( ) const
virtualinherited

Returns the advanced 'execute_on' settings.

Check if this is valid first with isAdvanced()

Reimplemented in AdvancedOutput.

Definition at line 251 of file Output.C.

252 {
253  mooseError("The output object ", name(), " is not an AdvancedOutput, use isAdvanced() to check.");
254  return _advanced_execute_on;
255 }
const std::string & name() const
Get the name of the object.
Definition: MooseObject.h:47
OutputOnWarehouse _advanced_execute_on
Storage for the individual component execute flags.
Definition: Output.h:237
void mooseError(Args &&...args) const
Definition: MooseObject.h:80
void Output::allowOutput ( bool  state)
inlineinherited

Method for controlling the allow output state.

Parameters
stateThe state to set the allow flag to

Definition at line 125 of file Output.h.

125 { _allow_output = state; }
bool _allow_output
Flag for disabling output.
Definition: Output.h:228
template<typename T >
T & Restartable::declareRestartableData ( std::string  data_name)
protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)

Definition at line 224 of file Restartable.h.

225 {
226  return declareRestartableDataWithContext<T>(data_name, NULL);
227 }
template<typename T >
T & Restartable::declareRestartableData ( std::string  data_name,
const T &  init_value 
)
protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
init_valueThe initial value of the data

Definition at line 231 of file Restartable.h.

232 {
233  return declareRestartableDataWithContext<T>(data_name, init_value, NULL);
234 }
template<typename T >
T & Restartable::declareRestartableDataWithContext ( std::string  data_name,
void *  context 
)
protectedinherited

Declare a piece of data as "restartable".

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
contextContext pointer that will be passed to the load and store functions

Definition at line 238 of file Restartable.h.

239 {
241  mooseError("No valid SubProblem found for ", _restartable_system_name, "/", _restartable_name);
242 
243  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;
244  RestartableData<T> * data_ptr = new RestartableData<T>(full_name, context);
245 
247 
248  return data_ptr->get();
249 }
std::string _restartable_system_name
The system name this object is in.
Definition: Restartable.h:202
void mooseError(Args &&...args)
Emit an error message with the given stringified, concatenated args and terminate the application...
Definition: MooseError.h:182
std::string _restartable_name
The name of the object.
Definition: Restartable.h:196
void registerRestartableDataOnSubProblem(std::string name, RestartableDataValue *data, THREAD_ID tid)
Helper function so we don&#39;t have to include SubProblem in the header.
Definition: Restartable.C:49
Concrete definition of a parameter value for a specified type.
SubProblem * _restartable_subproblem
Pointer to the SubProblem class.
Definition: Restartable.h:208
THREAD_ID _restartable_tid
The thread ID for this object.
Definition: Restartable.h:205
template<typename T >
T & Restartable::declareRestartableDataWithContext ( std::string  data_name,
const T &  init_value,
void *  context 
)
protectedinherited

Declare a piece of data as "restartable" and initialize it.

This means that in the event of a restart this piece of data will be restored back to its previous value.

NOTE: This returns a reference! Make sure you store it in a reference!

Parameters
data_nameThe name of the data (usually just use the same name as the member variable)
init_valueThe initial value of the data
contextContext pointer that will be passed to the load and store functions

Definition at line 253 of file Restartable.h.

256 {
258  mooseError("No valid SubProblem found for ", _restartable_system_name, "/", _restartable_name);
259 
260  std::string full_name = _restartable_system_name + "/" + _restartable_name + "/" + data_name;
261  RestartableData<T> * data_ptr = new RestartableData<T>(full_name, context);
262 
263  data_ptr->set() = init_value;
264 
266 
267  return data_ptr->get();
268 }
std::string _restartable_system_name
The system name this object is in.
Definition: Restartable.h:202
void mooseError(Args &&...args)
Emit an error message with the given stringified, concatenated args and terminate the application...
Definition: MooseError.h:182
std::string _restartable_name
The name of the object.
Definition: Restartable.h:196
void registerRestartableDataOnSubProblem(std::string name, RestartableDataValue *data, THREAD_ID tid)
Helper function so we don&#39;t have to include SubProblem in the header.
Definition: Restartable.C:49
Concrete definition of a parameter value for a specified type.
SubProblem * _restartable_subproblem
Pointer to the SubProblem class.
Definition: Restartable.h:208
THREAD_ID _restartable_tid
The thread ID for this object.
Definition: Restartable.h:205
Real Output::dt ( )
virtualinherited

Get the current time step size.

Definition at line 215 of file Output.C.

Referenced by Console::writeTimestepInformation().

216 {
217  if (_transient)
218  return _dt;
219  else
220  return 1;
221 }
bool _transient
Transient flag (true = transient)
Definition: Output.h:174
Real & _dt
Time step delta.
Definition: Output.h:198
Real Output::dtOld ( )
virtualinherited

Get old time step size.

Definition at line 224 of file Output.C.

225 {
226  if (_transient)
227  return _dt_old;
228  else
229  return 1;
230 }
Real & _dt_old
Old time step delta.
Definition: Output.h:201
bool _transient
Transient flag (true = transient)
Definition: Output.h:174
virtual bool MooseObject::enabled ( )
inlinevirtualinherited

Return the enabled status of the object.

Reimplemented in EigenKernel.

Definition at line 77 of file MooseObject.h.

Referenced by EigenKernel::enabled().

77 { return _enabled; }
const bool & _enabled
Reference to the "enable" InputParaemters, used by Controls for toggling on/off MooseObjects.
Definition: MooseObject.h:117
ExecFlagType SetupInterface::execBitFlags ( ) const
inherited

Build and return the execution flags as a bitfield.

Definition at line 100 of file SetupInterface.C.

Referenced by EigenExecutionerBase::init().

101 {
102  unsigned int exec_bit_field = EXEC_NONE;
103  for (unsigned int i = 0; i < _exec_flags.size(); ++i)
104  exec_bit_field |= _exec_flags[i];
105 
106  return static_cast<ExecFlagType>(exec_bit_field);
107 }
std::vector< ExecFlagType > _exec_flags
execution flag (when is the object executed/evaluated)
ExecFlagType
Execution flags - when is the object executed/evaluated.
Definition: MooseTypes.h:90
const std::vector< ExecFlagType > & SetupInterface::execFlags ( ) const
virtualinherited

Get the execution flag for the object.

Reimplemented in MultiAppTransfer.

Definition at line 94 of file SetupInterface.C.

Referenced by ExecuteMooseObjectWarehouse< T >::addObjectMask(), and MultiAppTransfer::execFlags().

95 {
96  return _exec_flags;
97 }
std::vector< ExecFlagType > _exec_flags
execution flag (when is the object executed/evaluated)
const MultiMooseEnum & Output::executeOn ( ) const
inherited

Get the current 'execute_on' selections for display.

Definition at line 239 of file Output.C.

240 {
241  return _execute_on;
242 }
MultiMooseEnum _execute_on
The common Execution types; this is used as the default execution type for everything except system i...
Definition: Output.h:186
MultiMooseEnum SetupInterface::getExecuteOptions ( )
staticinherited

Returns the available options for the 'execute_on' input parameters.

Returns
A MooseEnum with the available 'execute_on' options, the default is 'residual'

Definition at line 110 of file SetupInterface.C.

Referenced by AddNodalNormalsAction::act(), AdvancedOutput::addValidParams(), AdvancedOutput::initExecutionTypes(), OutputOnWarehouse::OutputOnWarehouse(), validParams< CommonOutputAction >(), validParams< Output >(), and validParams< SetupInterface >().

111 {
112  return MultiMooseEnum("none=0x00 initial=0x01 linear=0x02 nonlinear=0x04 timestep_end=0x08 "
113  "timestep_begin=0x10 final=0x20 custom=0x100",
114  "linear");
115 }
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
MultiMooseEnum Output::getExecuteOptions ( std::string  default_type = "")
staticinherited

Return the support output execution times.

Parameters
default_typeThe default MultiMooseEnum option

Definition at line 83 of file Output.C.

84 {
85  // Build the string of options
86  std::string options = "none=0x00 initial=0x01 linear=0x02 nonlinear=0x04 timestep_end=0x08 "
87  "timestep_begin=0x10 final=0x20 failed=0x80";
88 
89  // The numbers associated must be in sync with the ExecFlagType in Moose.h
90  return MultiMooseEnum(options, default_type);
91 }
This is a "smart" enum class intended to replace many of the shortcomings in the C++ enum type It sho...
MooseApp& MooseObject::getMooseApp ( )
inlineinherited

Get the MooseApp this object is associated with.

Definition at line 72 of file MooseObject.h.

Referenced by RestartableDataIO::createBackup(), RestartableDataIO::deserializeRestartableData(), Resurrector::restartRestartableData(), and RestartableDataIO::restoreBackup().

72 { return _app; }
MooseApp & _app
The MooseApp this object is associated with.
Definition: MooseObject.h:108
template<typename T >
const T & MooseObject::getParam ( const std::string &  name) const
inherited

Retrieve a parameter for the object.

Parameters
nameThe name of the parameter
Returns
The value of the parameter

Definition at line 122 of file MooseObject.h.

Referenced by FEProblemBase::addMaterial(), ConstraintWarehouse::addObject(), BicubicSplineFunction::BicubicSplineFunction(), Piecewise::buildFromXandY(), EigenKernel::EigenKernel(), FieldSplitPreconditioner::FieldSplitPreconditioner(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), GenericConstantRankTwoTensor::GenericConstantRankTwoTensor(), TimeSequenceStepper::init(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), Console::initialSetup(), AdvancedOutput::initialSetup(), SideSetsBetweenSubdomains::modify(), AddExtraNodeset::modify(), MeshExtruder::modify(), SideSetsAroundSubdomain::modify(), RenameBlock::modify(), MooseObject::parameters(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), SingleMatrixPreconditioner::SingleMatrixPreconditioner(), TimePeriod::TimePeriod(), and VectorOfPostprocessors::VectorOfPostprocessors().

123 {
124  return InputParameters::getParamHelper(name, _pars, static_cast<T *>(0));
125 }
const std::string & name() const
Get the name of the object.
Definition: MooseObject.h:47
static const T & getParamHelper(const std::string &name, const InputParameters &pars, const T *the_type)
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
Definition: MooseObject.h:111
void Output::initialSetup ( )
protectedvirtualinherited

Initialization method.

This populates the various data structures needed to control the output

Reimplemented from SetupInterface.

Reimplemented in AdvancedOutput, CSV, Exodus, Nemesis, and Console.

Definition at line 133 of file Output.C.

134 {
135  _initialized = true;
136 }
bool _initialized
True if init() has been called.
Definition: Output.h:225
const unsigned int& Output::interval ( ) const
inherited

Get the output interval.

bool Output::isAdvanced ( )
inherited

Returns true if this object is an AdvancedOutput object.

Definition at line 245 of file Output.C.

246 {
247  return _is_advanced;
248 }
bool _is_advanced
Flag for advanced output testing.
Definition: Output.h:231
bool MooseObject::isParamValid ( const std::string &  name) const
inlineinherited

Test if the supplied parameter is valid.

Parameters
nameThe name of the parameter to test

Definition at line 67 of file MooseObject.h.

Referenced by BicubicSplineFunction::BicubicSplineFunction(), Piecewise::buildFromFile(), Piecewise::buildFromXandY(), GeneratedMesh::buildMesh(), LibmeshPartitioner::clone(), OversampleOutput::cloneMesh(), CSVReader::CSVReader(), MultiAppNearestNodeTransfer::execute(), FileOutput::FileOutput(), MultiApp::fillPositions(), MultiAppNearestNodeTransfer::getLocalNodes(), MultiAppNearestNodeTransfer::getNearestNode(), IterationAdaptiveDT::init(), EigenExecutionerBase::init(), MooseMesh::init(), AdvancedOutput::initExecutionTypes(), BlockRestrictable::initializeBlockRestrictable(), BoundaryRestrictable::initializeBoundaryRestrictable(), SolutionAux::initialSetup(), MooseParsedVectorFunction::initialSetup(), Console::initialSetup(), Receiver::initialSetup(), SolutionFunction::initialSetup(), MooseParsedGradFunction::initialSetup(), MooseParsedFunction::initialSetup(), AdvancedOutput::initialSetup(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), IterationAdaptiveDT::IterationAdaptiveDT(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), BreakBoundaryOnSubdomain::modify(), MeshExtruder::modify(), MeshSideSet::modify(), AssignElementSubdomainID::modify(), RenameBlock::modify(), ParsedSubdomainMeshModifier::modify(), SubdomainBoundingBox::modify(), EigenExecutionerBase::normalizeSolution(), Output::Output(), Exodus::outputSetup(), PetscOutput::PetscOutput(), Piecewise::Piecewise(), SolutionUserObject::readExodusII(), RenameBlock::RenameBlock(), Piecewise::setData(), SolutionUserObject::SolutionUserObject(), and TimePeriod::TimePeriod().

67 { return _pars.isParamValid(name); }
const std::string & name() const
Get the name of the object.
Definition: MooseObject.h:47
bool isParamValid(const std::string &name) const
This method returns parameters that have been initialized in one fashion or another, i.e.
const InputParameters & _pars
Parameters of this object, references the InputParameters stored in the InputParametersWarehouse.
Definition: MooseObject.h:111
void SetupInterface::jacobianSetup ( )
virtualinherited

Gets called just before the Jacobian is computed and before this object is asked to do its job.

Definition at line 79 of file SetupInterface.C.

80 {
81 }
virtual void MeshChangedInterface::meshChanged ( )
inlinevirtualinherited

Called on this object when the mesh changes.

Reimplemented in DiracKernel, Console, OversampleOutput, Exodus, Nemesis, GeometryBase, and EqualValueBoundaryConstraint.

Definition at line 43 of file MeshChangedInterface.h.

43 {}
template<typename... Args>
void MooseObject::mooseDeprecated ( Args &&...  args) const
inlineinherited
template<typename... Args>
void MooseObject::mooseError ( Args &&...  args) const
inlineinherited

Definition at line 80 of file MooseObject.h.

Referenced by FEProblemBase::addInitialCondition(), DiracKernel::addPointWithValidId(), FEProblemBase::addPostprocessor(), MooseMesh::addQuadratureNode(), FEProblemBase::addVectorPostprocessor(), Output::advancedExecuteOn(), AnnularMesh::AnnularMesh(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), Function::average(), Axisymmetric2D3DSolutionFunction::Axisymmetric2D3DSolutionFunction(), BicubicSplineFunction::BicubicSplineFunction(), BoundingValueElementDamper::BoundingValueElementDamper(), BoundingValueNodalDamper::BoundingValueNodalDamper(), BoundsAux::BoundsAux(), MooseMesh::buildCoarseningMap(), Piecewise::buildFromFile(), Piecewise::buildFromXandY(), Piecewise::buildFromXY(), TiledMesh::buildMesh(), GeneratedMesh::buildMesh(), ImageMesh::buildMesh3D(), MooseMesh::buildRefinementMap(), EigenExecutionerBase::chebyshev(), FEProblemBase::checkCoordinateSystems(), FEProblemBase::checkDependMaterialsHelper(), FEProblemBase::checkDisplacementOrders(), Material::checkExecutionStage(), Steady::checkIntegrity(), EigenExecutionerBase::checkIntegrity(), SubProblem::checkMatProps(), FEProblemBase::checkProblemIntegrity(), Material::checkStatefulSanity(), FEProblemBase::checkUserObjects(), LibmeshPartitioner::clone(), CompositeFunction::CompositeFunction(), ElementLpNormAux::compute(), ElementH1ErrorFunctionAux::compute(), TimeSequenceStepperBase::computeFailedDT(), IterationAdaptiveDT::computeFailedDT(), TimeStepper::computeFailedDT(), FEProblemBase::computeResidual(), Material::computeSubdomainProperties(), PenetrationAux::computeValue(), TimeStepper::constrainStep(), AuxKernel::coupledDot(), AuxKernel::coupledDotDu(), DebugResidualAux::DebugResidualAux(), BicubicSplineFunction::derivative(), DGKernel::DGKernel(), SolutionUserObject::discontinuousPointValue(), SolutionUserObject::discontinuousPointValueGradient(), FEProblemBase::duplicateVariableCheck(), EigenProblem::EigenProblem(), Eigenvalues::Eigenvalues(), ElementalVariableValue::ElementalVariableValue(), MooseMesh::errorIfDistributedMesh(), SolutionUserObject::evalMeshFunction(), SolutionUserObject::evalMeshFunctionGradient(), SolutionUserObject::evalMultiValuedMeshFunction(), SolutionUserObject::evalMultiValuedMeshFunctionGradient(), PerflogDumper::execute(), NodalValueSampler::execute(), MultiAppPostprocessorTransfer::execute(), DiscreteElementUserObject::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), MultiAppNearestNodeTransfer::execute(), PointValue::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), FindValueOnLine::execute(), MultiAppInterpolationTransfer::execute(), TimeExtremeValue::execute(), LeastSquaresFit::execute(), FEProblemBase::executeControls(), FileOutput::FileOutput(), MultiApp::fillPositions(), VerifyElementUniqueID::finalize(), VerifyNodalUniqueID::finalize(), DiscreteElementUserObject::finalize(), MemoryUsage::finalize(), PointSamplerBase::finalize(), Transfer::find_sys(), FiniteDifferencePreconditioner::FiniteDifferencePreconditioner(), FunctionDT::FunctionDT(), FunctionScalarAux::FunctionScalarAux(), FunctionScalarIC::FunctionScalarIC(), GapValueAux::GapValueAux(), GeneratedMesh::GeneratedMesh(), GenericConstantMaterial::GenericConstantMaterial(), GenericFunctionMaterial::GenericFunctionMaterial(), MooseMesh::getBoundaryID(), MultiApp::getBoundingBox(), MooseMesh::getCoarseningMap(), FEProblemBase::getCoordSystem(), PiecewiseConstant::getDirection(), FEProblemBase::getDistribution(), MultiApp::getExecutioner(), FEProblemBase::getFunction(), SolutionUserObject::getLocalVarIndex(), AuxKernel::getMaterialProperty(), AuxKernel::getMaterialPropertyOld(), AuxKernel::getMaterialPropertyOlder(), GeneratedMesh::getMaxInDimension(), AnnularMesh::getMaxInDimension(), FEProblemBase::getMaxQps(), FEProblemBase::getMaxShapeFunctions(), GeneratedMesh::getMinInDimension(), AnnularMesh::getMinInDimension(), MooseMesh::getMortarInterface(), MooseMesh::getMortarInterfaceByName(), MooseMesh::getNodeBlockIds(), MooseMesh::getNodeList(), FEProblemBase::getNonlinearSystem(), MooseMesh::getPairedBoundaryMapping(), ImageMesh::GetPixelInfo(), MaterialStdVectorAux::getRealValue(), MooseMesh::getRefinementMap(), FEProblemBase::getSampler(), DisplacedProblem::getScalarVariable(), FEProblemBase::getScalarVariable(), MooseMesh::getSubdomainBoundaryIds(), MooseMesh::getSubdomainID(), DisplacedProblem::getSystem(), FEProblemBase::getSystem(), FEProblemBase::getUserObjectBase(), NumVars::getValue(), PerformanceData::getValue(), Residual::getValue(), FindValueOnLine::getValueAtPoint(), DisplacedProblem::getVariable(), FEProblemBase::getVariable(), MultiApp::globalAppToLocal(), MooseParsedVectorFunction::gradient(), AdvancedOutput::hasOutputHelper(), CSVTimeSequenceStepper::init(), IterationAdaptiveDT::init(), EigenExecutionerBase::init(), MooseMesh::init(), FEProblemBase::init(), NumPicardIterations::initialize(), FullSolveMultiApp::initialSetup(), SolutionAux::initialSetup(), Axisymmetric2D3DSolutionFunction::initialSetup(), Exodus::initialSetup(), SolutionFunction::initialSetup(), SolutionUserObject::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initShowHideLists(), Material::initStatefulProperties(), Function::integral(), IntegratedBC::IntegratedBC(), InterfaceKernel::InterfaceKernel(), EigenExecutionerBase::inversePowerIteration(), InversePowerMethod::InversePowerMethod(), IterationAdaptiveDT::IterationAdaptiveDT(), KernelBase::KernelBase(), LeastSquaresFit::LeastSquaresFit(), LibmeshPartitioner::LibmeshPartitioner(), LinearCombinationFunction::LinearCombinationFunction(), LinearCombinationPostprocessor::LinearCombinationPostprocessor(), LinearNodalConstraint::LinearNodalConstraint(), LineMaterialSamplerBase< T >::LineMaterialSamplerBase(), MaterialRealTensorValueAux::MaterialRealTensorValueAux(), MaterialRealVectorValueAux::MaterialRealVectorValueAux(), MaterialStdVectorRealGradientAux::MaterialStdVectorRealGradientAux(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), SubProblem::meshChanged(), MeshExtruder::MeshExtruder(), SideSetsFromNormals::modify(), SideSetsFromPoints::modify(), AddExtraNodeset::modify(), MeshExtruder::modify(), AssignElementSubdomainID::modify(), AddAllSideSetsByNormals::modify(), ElementDeleterBase::modify(), ParsedSubdomainMeshModifier::modify(), RenameBlock::modify(), ImageSubdomain::modify(), BoundingBoxNodeSet::modify(), OrientedSubdomainBoundingBox::modify(), AddSideSetsFromBoundingBox::modify(), SubdomainBoundingBox::modify(), MultiAppMeshFunctionTransfer::MultiAppMeshFunctionTransfer(), MultiAppPostprocessorTransfer::MultiAppPostprocessorTransfer(), NearestNodeDistanceAux::NearestNodeDistanceAux(), NearestNodeValueAux::NearestNodeValueAux(), NodalBC::NodalBC(), NodalConstraint::NodalConstraint(), NodalEqualValueConstraint::NodalEqualValueConstraint(), NodalKernel::NodalKernel(), NodalVariableValue::NodalVariableValue(), NumDOFs::NumDOFs(), NumNonlinearIterations::NumNonlinearIterations(), VTKOutput::output(), XDA::output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputScalarVariables(), AdvancedOutput::outputSystemInformation(), Console::outputVectorPostprocessors(), AdvancedOutput::outputVectorPostprocessors(), PiecewiseBilinear::parse(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PatternedMesh::PatternedMesh(), PhysicsBasedPreconditioner::PhysicsBasedPreconditioner(), Piecewise::Piecewise(), PiecewiseBilinear::PiecewiseBilinear(), PiecewiseLinearInterpolationMaterial::PiecewiseLinearInterpolationMaterial(), PiecewiseMultilinear::PiecewiseMultilinear(), SolutionUserObject::pointValueGradientWrapper(), SolutionUserObject::pointValueWrapper(), LStableDirk2::postStep(), LStableDirk3::postStep(), ImplicitMidpoint::postStep(), ExplicitTVDRK2::postStep(), AStableDirk4::postStep(), LStableDirk4::postStep(), ExplicitRK2::postStep(), Predictor::Predictor(), SolutionUserObject::readExodusII(), SolutionUserObject::readXda(), RelativeSolutionDifferenceNorm::RelativeSolutionDifferenceNorm(), RenameBlock::RenameBlock(), ScalarComponentIC::ScalarComponentIC(), BicubicSplineFunction::secondDerivative(), FEProblemBase::setCoordSystem(), Piecewise::setData(), EigenProblem::setEigenproblemType(), Sampler::setNumberOfRequiedRandomSeeds(), Split::setup(), TransientMultiApp::setupApp(), TimeSequenceStepperBase::setupSequence(), Transient::setupTimeIntegrator(), SideSetsFromNormals::SideSetsFromNormals(), SideSetsFromPoints::SideSetsFromPoints(), SolutionUserObject::SolutionUserObject(), FullSolveMultiApp::solveStep(), UserObject::spatialValue(), SphericalAverage::SphericalAverage(), StitchedMesh::StitchedMesh(), NodalUserObject::subdomainSetup(), GeneralUserObject::subdomainSetup(), Constraint::subdomainSetup(), Console::systemInfoFlags(), Terminator::Terminator(), TestSetupPostprocessorDataActionFunction::TestSetupPostprocessorDataActionFunction(), DiscreteElementUserObject::threadJoin(), GeneralUserObject::threadJoin(), Function::timeDerivative(), TimeExtremeValue::TimeExtremeValue(), TimePeriod::TimePeriod(), MultiAppCopyTransfer::transfer(), MultiAppMeshFunctionTransfer::transferVariable(), Transient::Transient(), TransientMultiApp::TransientMultiApp(), EqualValueBoundaryConstraint::updateConstrainedNodes(), SolutionUserObject::updateExodusBracketingTimeIndices(), Axisymmetric2D3DSolutionFunction::value(), ValueRangeMarker::ValueRangeMarker(), ValueThresholdMarker::ValueThresholdMarker(), MultiAppTransfer::variableIntegrityCheck(), VariableResidual::VariableResidual(), VariableTimeIntegrationAux::VariableTimeIntegrationAux(), VectorOfPostprocessors::VectorOfPostprocessors(), VectorPostprocessorFunction::VectorPostprocessorFunction(), MooseParsedGradFunction::vectorValue(), MooseParsedFunction::vectorValue(), and VolumeHistogram::VolumeHistogram().

81  {
82  std::ostringstream oss;
83  moose::internal::mooseStreamAll(oss, std::forward<Args>(args)...);
84  std::string msg = oss.str();
85  callMooseErrorRaw(msg, &_app);
86  }
void mooseStreamAll(std::ostringstream &ss)
Definition: MooseError.C:78
void callMooseErrorRaw(std::string &msg, MooseApp *app)
Definition: MooseObject.C:45
MooseApp & _app
The MooseApp this object is associated with.
Definition: MooseObject.h:108
template<typename... Args>
void MooseObject::mooseInfo ( Args &&...  args) const
inlineinherited

Definition at line 101 of file MooseObject.h.

102  {
103  moose::internal::mooseInfoStream(_console, std::forward<Args>(args)...);
104  }
void mooseInfoStream(S &oss, Args &&...args)
Definition: MooseError.h:145
const ConsoleStream _console
An instance of helper class to write streams to the Console objects.
template<typename... Args>
void MooseObject::mooseWarning ( Args &&...  args) const
inlineinherited
const std::string& MooseObject::name ( ) const
inlineinherited

Get the name of the object.

Returns
The name of the object

Definition at line 47 of file MooseObject.h.

Referenced by FEProblemBase::addDistribution(), FEProblemBase::addFunction(), FEProblemBase::addIndicator(), FEProblemBase::addInitialCondition(), FEProblemBase::addMarker(), FEProblemBase::addMaterial(), MooseMesh::addMortarInterface(), FEProblemBase::addMultiApp(), FEProblemBase::addPredictor(), FEProblemBase::addSampler(), FEProblemBase::addTransfer(), FEProblemBase::addUserObject(), Output::advancedExecuteOn(), MultiApp::appPostprocessorValue(), MultiApp::appProblem(), MultiApp::appProblemBase(), MultiApp::appUserObjectBase(), AStableDirk4::AStableDirk4(), Function::average(), FEProblemBase::checkDependMaterialsHelper(), Damper::checkMinDamping(), Material::checkStatefulSanity(), CompositeFunction::CompositeFunction(), Material::computeSubdomainProperties(), AuxKernel::coupledCallback(), AuxKernel::coupledDot(), AuxKernel::coupledDotDu(), MultiApp::createApp(), DGKernel::DGKernel(), AB2PredictorCorrector::estimateTimeError(), SolutionUserObject::evalMeshFunction(), SolutionUserObject::evalMeshFunctionGradient(), SolutionUserObject::evalMultiValuedMeshFunction(), SolutionUserObject::evalMultiValuedMeshFunctionGradient(), MultiAppPostprocessorTransfer::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), MultiAppNearestNodeTransfer::execute(), PointValue::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppMeshFunctionTransfer::execute(), MultiAppInterpolationTransfer::execute(), MultiAppUserObjectTransfer::execute(), MultiAppProjectionTransfer::execute(), MultiAppCopyTransfer::execute(), FileOutput::FileOutput(), MultiApp::fillPositions(), PointSamplerBase::finalize(), GeneralUserObject::GeneralUserObject(), MultiApp::getBoundingBox(), Control::getControllableParameterHelper(), Control::getControllableValue(), AuxKernel::getDependObjects(), MultiApp::getExecutioner(), OutputWarehouse::getFileNumbers(), SolutionUserObject::getLocalVarIndex(), AuxKernel::getMaterialProperty(), SubProblem::getMaterialPropertyBlockNames(), SubProblem::getMaterialPropertyBoundaryNames(), AuxKernel::getMaterialPropertyOld(), AuxKernel::getMaterialPropertyOlder(), OutputWarehouse::getOutput(), Transient::getTimeStepperName(), InitialCondition::getUserObject(), AuxKernel::getUserObject(), InitialCondition::getUserObjectByName(), AuxKernel::getUserObjectByName(), AdvancedOutput::hasOutputHelper(), FEProblemBase::init(), CSVReader::initialize(), MultiAppProjectionTransfer::initialSetup(), InitialCondition::initialSetup(), SolutionUserObject::initialSetup(), AdvancedOutput::initOutputList(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), Material::initStatefulProperties(), Function::integral(), IntegratedBC::IntegratedBC(), InterfaceKernel::InterfaceKernel(), KernelBase::KernelBase(), LinearCombinationFunction::LinearCombinationFunction(), Marker::Marker(), MaterialDerivativeTestKernelBase< T >::MaterialDerivativeTestKernelBase(), MaterialVectorPostprocessor::MaterialVectorPostprocessor(), ElementDeleterBase::modify(), NodalBC::NodalBC(), NodalEqualValueConstraint::NodalEqualValueConstraint(), NodalKernel::NodalKernel(), NodalValueSampler::NodalValueSampler(), NodalVariableValue::NodalVariableValue(), DOFMapOutput::output(), AdvancedOutput::outputElementalVariables(), AdvancedOutput::outputInput(), AdvancedOutput::outputNodalVariables(), ConsoleUtils::outputOutputInformation(), Nemesis::outputPostprocessors(), Exodus::outputPostprocessors(), AdvancedOutput::outputPostprocessors(), AdvancedOutput::outputScalarVariables(), AdvancedOutput::outputSystemInformation(), AdvancedOutput::outputVectorPostprocessors(), MooseObject::parameters(), Executioner::parentOutputPositionChanged(), ParsedAddSideset::ParsedAddSideset(), ParsedAux::ParsedAux(), ParsedODEKernel::ParsedODEKernel(), ParsedSubdomainMeshModifier::ParsedSubdomainMeshModifier(), PointSamplerBase::PointSamplerBase(), SubProblem::registerRecoverableData(), SubProblem::registerRestartableData(), Material::resetQpProperties(), Sampler::Sampler(), ScalarComponentIC::ScalarComponentIC(), MooseMesh::setBoundaryName(), Control::setControllableValue(), OutputWarehouse::setFileNumbers(), MooseMesh::setSubdomainName(), Split::setup(), TransientMultiApp::setupApp(), SideValueSampler::SideValueSampler(), TransientMultiApp::solveStep(), UserObject::spatialValue(), SphericalAverage::SphericalAverage(), StitchedMesh::StitchedMesh(), Function::timeDerivative(), TransientMultiApp::TransientMultiApp(), MultiAppTransfer::variableIntegrityCheck(), VariableResidual::VariableResidual(), and AdvancedOutput::wantOutput().

47 { return _name; }
const std::string & _name
The name of this object, reference to value stored in InputParameters.
Definition: MooseObject.h:114
bool Output::onInterval ( )
protectedvirtualinherited

Returns true if the output interval is satisfied.

Definition at line 175 of file Output.C.

Referenced by Console::output(), OversampleOutput::outputStep(), and Output::outputStep().

176 {
177  // The output flag to return
178  bool output = false;
179 
180  // Return true if the current step on the current output interval and within the output time range
181  if (_time >= _start_time && _time <= _end_time && (_t_step % _interval) == 0)
182  output = true;
183 
184  // Return false if 'sync_only' is set to true
185  if (_sync_only)
186  output = false;
187 
188  // If sync times are not skipped, return true if the current time is a sync_time
189  if (_sync_times.find(_time) != _sync_times.end())
190  output = true;
191 
192  // Return the output status
193  return output;
194 }
virtual void output(const ExecFlagType &type)=0
Overload this function with the desired output activities.
Real _start_time
Start outputting time.
Definition: Output.h:213
int & _t_step
The current time step.
Definition: Output.h:195
const unsigned int _interval
The output time step interval.
Definition: Output.h:207
bool _sync_only
Flag for only executing at sync times.
Definition: Output.h:222
std::set< Real > _sync_times
Sync times for this outputter.
Definition: Output.h:210
Real _end_time
End outputting time.
Definition: Output.h:216
Real & _time
The current time for output purposes.
Definition: Output.h:189
void TopResidualDebugOutput::output ( const ExecFlagType type)
overrideprotectedvirtual

Perform the debugging output.

Implements Output.

Definition at line 51 of file TopResidualDebugOutput.C.

52 {
53  // Display the top residuals
54  if (_num_residuals > 0)
56 }
NonlinearSystemBase & getNonlinearSystemBase()
void printTopResiduals(const NumericVector< Number > &residual, unsigned int n)
Prints the n top residuals for the variables in the system.
FEProblemBase * _problem_ptr
Pointer the the FEProblemBase object for output object (use this)
Definition: Output.h:171
virtual NumericVector< Number > & RHS()=0
unsigned int _num_residuals
Number of residuals to display.
void Output::outputStep ( const ExecFlagType type)
virtualinherited

A single call to this function should output all the necessary data for a single timestep.

Parameters
typeThe type execution flag (see Moose.h)
See also
outputNodalVariables outputElementalVariables outputScalarVariables outputPostprocessors

Reimplemented in OversampleOutput.

Definition at line 144 of file Output.C.

Referenced by PetscOutput::petscLinearOutput(), and PetscOutput::petscNonlinearOutput().

145 {
146  // Output is not allowed
147  if (!_allow_output && type != EXEC_FORCED)
148  return;
149 
150  // If recovering disable output of initial condition, it was already output
151  if (type == EXEC_INITIAL && _app.isRecovering())
152  return;
153 
154  // Return if the current output is not on the desired interval
155  if (type != EXEC_FINAL && !onInterval())
156  return;
157 
158  // Call the output method
159  if (shouldOutput(type))
160  output(type);
161 }
bool isRecovering() const
Whether or not this is a "recover" calculation.
Definition: MooseApp.C:608
virtual bool onInterval()
Returns true if the output interval is satisfied.
Definition: Output.C:175
Object is evaluated only once at the beginning of the simulation.
Definition: MooseTypes.h:94
virtual void output(const ExecFlagType &type)=0
Overload this function with the desired output activities.
virtual bool shouldOutput(const ExecFlagType &type)
Handles logic for determining if a step should be output.
Definition: Output.C:164
Forces execution to occur (output only)
Definition: MooseTypes.h:106
bool _allow_output
Flag for disabling output.
Definition: Output.h:228
MatType type
MooseApp & _app
The MooseApp this object is associated with.
Definition: MooseObject.h:108
Object is evaluated at the end of the simulations (output only)
Definition: MooseTypes.h:104
const InputParameters& MooseObject::parameters ( ) const
inlineinherited
void TopResidualDebugOutput::printTopResiduals ( const NumericVector< Number > &  residual,
unsigned int  n 
)
protected

Prints the n top residuals for the variables in the system.

Parameters
residualA reference to the residual vector
nThe number of residuals to print

Definition at line 59 of file TopResidualDebugOutput.C.

Referenced by output().

60 {
61  // Need a reference to the libMesh mesh object
62  MeshBase & mesh = _problem_ptr->mesh().getMesh();
63 
64  std::vector<TopResidualDebugOutputTopResidualData> vec;
65  vec.resize(residual.local_size());
66 
67  unsigned int j = 0;
68  MeshBase::node_iterator it = mesh.local_nodes_begin();
69  const MeshBase::node_iterator end = mesh.local_nodes_end();
70  for (; it != end; ++it)
71  {
72  Node & node = *(*it);
73  dof_id_type nd = node.id();
74 
75  for (unsigned int var = 0; var < node.n_vars(_sys.number()); ++var)
76  if (node.n_dofs(_sys.number(), var) >
77  0) // this check filters scalar variables (which are clearly not a dof on every node)
78  {
79  dof_id_type dof_idx = node.dof_number(_sys.number(), var, 0);
80  vec[j] = TopResidualDebugOutputTopResidualData(var, nd, residual(dof_idx));
81  j++;
82  }
83  }
84 
85  // Loop over all scalar variables
86  std::vector<unsigned int> var_nums;
87  _sys.get_all_variable_numbers(var_nums);
88  const DofMap & dof_map = _sys.get_dof_map();
89  for (const auto & var_num : var_nums)
90  if (_sys.variable_type(var_num).family == SCALAR)
91  {
92  std::vector<dof_id_type> dof_indices;
93  dof_map.SCALAR_dof_indices(dof_indices, var_num);
94 
95  for (const auto & dof : dof_indices)
96  if (dof >= dof_map.first_dof() && dof < dof_map.end_dof())
97  {
98  vec[j] = TopResidualDebugOutputTopResidualData(var_num, 0, residual(dof), true);
99  j++;
100  }
101  }
102 
103  // Sort vec by residuals
104  std::sort(vec.begin(), vec.end(), sortTopResidualData);
105 
106  // Display the residuals
107  Moose::err << "[DBG][" << processor_id() << "] Max " << n << " residuals";
108  if (j < n)
109  {
110  n = j;
111  Moose::err << " (Only " << n << " available)";
112  }
113  Moose::err << std::endl;
114 
115  for (unsigned int i = 0; i < n; ++i)
116  {
117  Moose::err << "[DBG][" << processor_id() << "] " << std::setprecision(15) << vec[i]._residual
118  << " '" << _sys.variable_name(vec[i]._var).c_str() << "' ";
119  if (vec[i]._is_scalar)
120  Moose::err << "(SCALAR)\n";
121  else
122  Moose::err << "at node " << vec[i]._nd << '\n';
123  }
124 }
static bool sortTopResidualData(TopResidualDebugOutputTopResidualData i, TopResidualDebugOutputTopResidualData j)
Method for sorting the residuals data from TopResidualDebugOutputTopResidualData structs.
System & _sys
Reference to libMesh system.
MeshBase & getMesh()
Accessor for the underlying libMesh Mesh object.
Definition: MooseMesh.C:2355
DofMap & dof_map
FEProblemBase * _problem_ptr
Pointer the the FEProblemBase object for output object (use this)
Definition: Output.h:171
A structure for storing data related to top residuals.
PetscInt n
virtual MooseMesh & mesh() override
void SetupInterface::residualSetup ( )
virtualinherited

Gets called just before the residual is computed and before this object is asked to do its job.

Definition at line 84 of file SetupInterface.C.

85 {
86 }
bool Output::shouldOutput ( const ExecFlagType type)
protectedvirtualinherited

Handles logic for determining if a step should be output.

Returns
True if a call if output should be preformed

Reimplemented in AdvancedOutput, and FileOutput.

Definition at line 164 of file Output.C.

Referenced by Output::outputStep(), FileOutput::shouldOutput(), and AdvancedOutput::shouldOutput().

165 {
166  // Note that in older versions of MOOSE, this was overloaded (unintentionally) to always return
167  // true for the Console output subclass - basically ignoring execute_on options specified for
168  // the console (e.g. via the input file).
170  return true;
171  return false;
172 }
MultiMooseEnum _execute_on
The common Execution types; this is used as the default execution type for everything except system i...
Definition: Output.h:186
bool contains(const std::string &value) const
Contains methods for seeing if a value is in the MultiMooseEnum.
Forces execution to occur (output only)
Definition: MooseTypes.h:106
MatType type
static bool TopResidualDebugOutput::sortTopResidualData ( TopResidualDebugOutputTopResidualData  i,
TopResidualDebugOutputTopResidualData  j 
)
inlinestaticprotected

Method for sorting the residuals data from TopResidualDebugOutputTopResidualData structs.

See also
printTopResiduals

Definition at line 82 of file TopResidualDebugOutput.h.

Referenced by printTopResiduals().

84  {
85  return (fabs(i._residual) > fabs(j._residual));
86  }
void SetupInterface::subdomainSetup ( )
virtualinherited

Gets called when the subdomain changes (i.e.

in a Jacobian or residual loop) and before this object is asked to do its job

Reimplemented in Material, Constraint, GeneralUserObject, and NodalUserObject.

Definition at line 89 of file SetupInterface.C.

90 {
91 }
Real PetscOutput::time ( )
overridevirtualinherited

Get the output time.

This outputter enables the ability to perform output on the nonlinear and linear iterations performed by PETSc. To separate theses outputs within the output a pseudo time is defined, this function provides this time and it should be used in place of _time from Outputter.

Reimplemented from Output.

Definition at line 258 of file PetscOutput.C.

Referenced by FileOutput::FileOutput(), Tecplot::output(), Nemesis::output(), Exodus::outputEmptyTimestep(), Exodus::outputNodalVariables(), TableOutput::outputPostprocessors(), TableOutput::outputScalarVariables(), and Console::writeTimestepInformation().

259 {
261  return _nonlinear_time;
262  else if (_on_linear_residual)
263  return _linear_time;
264  else
265  return Output::time();
266 }
bool _on_linear_residual
True if current output calls is on the linear residual (used by time())
Definition: PetscOutput.h:94
Real _linear_time
Psuedo linear time.
Definition: PetscOutput.h:88
bool _on_nonlinear_residual
True if current output call is on the non-linear residual (used by time())
Definition: PetscOutput.h:97
Real _nonlinear_time
The psuedo non-linear time.
Definition: PetscOutput.h:82
virtual Real time()
Get the output time.
Definition: Output.C:197
Real Output::timeOld ( )
virtualinherited

Get the old output time.

Returns
The old output time, which may be different than the simulation time
See also
time()

Definition at line 206 of file Output.C.

Referenced by Console::writeTimestepInformation().

207 {
208  if (_transient)
209  return _time_old;
210  else
211  return _t_step - 1;
212 }
Real & _time_old
The old time.
Definition: Output.h:192
int & _t_step
The current time step.
Definition: Output.h:195
bool _transient
Transient flag (true = transient)
Definition: Output.h:174
int Output::timeStep ( )
virtualinherited

Get the current time step.

Definition at line 233 of file Output.C.

Referenced by Checkpoint::filename(), CSV::output(), and Console::writeTimestepInformation().

234 {
235  return _t_step;
236 }
int & _t_step
The current time step.
Definition: Output.h:195
void SetupInterface::timestepSetup ( )
virtualinherited

Gets called at the beginning of the timestep before this object is asked to do its job.

Reimplemented in SolutionUserObject, NumNonlinearIterations, and MemoryUsage.

Definition at line 74 of file SetupInterface.C.

75 {
76 }

Member Data Documentation

OutputOnWarehouse Output::_advanced_execute_on
protectedinherited
bool Output::_allow_output
protectedinherited

Flag for disabling output.

Definition at line 228 of file Output.h.

Referenced by OversampleOutput::outputStep(), and Output::outputStep().

MooseApp& MooseObject::_app
protectedinherited

The MooseApp this object is associated with.

Definition at line 108 of file MooseObject.h.

Referenced by AB2PredictorCorrector::AB2PredictorCorrector(), Executioner::addAttributeReporter(), FEProblemBase::addMaterial(), FEProblemBase::addMultiApp(), FEProblemBase::allowOutput(), AStableDirk4::AStableDirk4(), FileMesh::buildMesh(), FEProblemBase::checkNonlinearConvergence(), OversampleOutput::cloneMesh(), FEProblemBase::computeJacobian(), FEProblemBase::computeResidualType(), Console::Console(), TimeStepper::constrainStep(), MultiApp::createApp(), EigenExecutionerBase::EigenExecutionerBase(), EigenKernel::EigenKernel(), InversePowerMethod::execute(), NonlinearEigen::execute(), Transient::execute(), Steady::execute(), FileOutput::FileOutput(), FEProblemBase::forceOutput(), MooseObject::getMooseApp(), InversePowerMethod::init(), NonlinearEigen::init(), Transient::init(), Steady::init(), MooseMesh::init(), NumPicardIterations::initialize(), TimePeriod::initialSetup(), Console::initialSetup(), MultiApp::initialSetup(), FEProblemBase::initialSetup(), AdvancedOutput::initOutputList(), FEProblemBase::initPetscOutput(), AdvancedOutput::initPostprocessorOrVectorPostprocessorLists(), InversePowerMethod::InversePowerMethod(), MooseObject::mooseError(), MooseMesh::MooseMesh(), NonlinearEigen::NonlinearEigen(), Tecplot::output(), Exodus::output(), Nemesis::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Exodus::outputEmptyTimestep(), Console::outputInput(), Exodus::outputInput(), Exodus::outputNodalVariables(), OversampleOutput::outputStep(), Output::outputStep(), FEProblemBase::outputStep(), Console::outputSystemInformation(), MultiApp::parentOutputPositionChanged(), PerformanceData::PerformanceData(), PetscOutput::petscLinearOutput(), PetscOutput::petscNonlinearOutput(), SubProblem::registerRecoverableData(), SubProblem::registerRestartableData(), FEProblemBase::setRestartFile(), TransientMultiApp::setupApp(), TimeSequenceStepperBase::setupSequence(), Transient::setupTimeIntegrator(), TransientMultiApp::solveStep(), FEProblemBase::subdomainSetup(), TimeExtremeValue::TimeExtremeValue(), TimePeriod::TimePeriod(), FEProblemBase::timestepSetup(), Transient::Transient(), and Console::write().

const ConsoleStream ConsoleStreamInterface::_console
inherited

An instance of helper class to write streams to the Console objects.

Definition at line 37 of file ConsoleStreamInterface.h.

Referenced by IterationAdaptiveDT::acceptStep(), CreateProblemAction::act(), SetupRecoverFileBaseAction::act(), Adaptivity::adaptMesh(), FEProblemBase::adaptMesh(), FEProblemBase::advanceMultiApps(), SimplePredictor::apply(), FEProblemBase::backupMultiApps(), FEProblemBase::checkProblemIntegrity(), IterationAdaptiveDT::computeAdaptiveDT(), Transient::computeConstrainedDT(), NonlinearSystemBase::computeDamping(), IterationAdaptiveDT::computeDT(), IterationAdaptiveDT::computeFailedDT(), IterationAdaptiveDT::computeInterpolationDT(), FEProblemBase::computeResidualType(), IterationAdaptiveDT::constrainStep(), TimeStepper::constrainStep(), AB2PredictorCorrector::converged(), FEProblemBase::execMultiApps(), FEProblemBase::execMultiAppTransfers(), MultiAppPostprocessorTransfer::execute(), MultiAppPostprocessorInterpolationTransfer::execute(), MultiAppVariableValueSamplePostprocessorTransfer::execute(), MultiAppNearestNodeTransfer::execute(), MultiAppPostprocessorToAuxScalarTransfer::execute(), MultiAppScalarToAuxScalarTransfer::execute(), MultiAppVariableValueSampleTransfer::execute(), MultiAppUserObjectTransfer::execute(), MultiAppInterpolationTransfer::execute(), MultiAppMeshFunctionTransfer::execute(), MultiAppProjectionTransfer::execute(), MultiAppCopyTransfer::execute(), Steady::execute(), MultiAppDTKUserObjectTransfer::execute(), ActionWarehouse::executeActionsWithAction(), ActionWarehouse::executeAllActions(), MultiApp::globalAppToLocal(), InversePowerMethod::init(), NonlinearEigen::init(), Steady::init(), FEProblemBase::initialAdaptMesh(), FEProblemBase::initialSetup(), EigenExecutionerBase::inversePowerIteration(), Transient::keepGoing(), IterationAdaptiveDT::limitDTByFunction(), IterationAdaptiveDT::limitDTToPostprocessorValue(), EigenExecutionerBase::makeBXConsistent(), Console::meshChanged(), MooseObject::mooseDeprecated(), MooseObject::mooseInfo(), MooseObject::mooseWarning(), DOFMapOutput::output(), VariableResidualNormsDebugOutput::output(), Console::output(), ControlOutput::outputActiveObjects(), ControlOutput::outputChangedControls(), ControlOutput::outputControls(), Console::outputInput(), Console::outputPostprocessors(), Console::outputScalarVariables(), Console::outputSystemInformation(), FEProblemBase::possiblyRebuildGeomSearchPatches(), EigenExecutionerBase::postExecute(), ActionWarehouse::printActionDependencySets(), EigenExecutionerBase::printEigenvalue(), MaterialPropertyDebugOutput::printMaterialMap(), SolutionTimeAdaptiveDT::rejectStep(), DT2::rejectStep(), FEProblemBase::restoreMultiApps(), SimplePredictor::shouldApply(), NonlinearSystem::solve(), LStableDirk2::solve(), LStableDirk3::solve(), ImplicitMidpoint::solve(), ExplicitTVDRK2::solve(), AStableDirk4::solve(), LStableDirk4::solve(), ExplicitRK2::solve(), TransientMultiApp::solveStep(), Transient::solveStep(), DT2::step(), AB2PredictorCorrector::step(), NonlinearEigen::takeStep(), FEProblemBase::useFECache(), Console::writeTimestepInformation(), Console::writeVariableNorms(), and FEProblemBase::~FEProblemBase().

const ExecFlagType& SetupInterface::_current_execute_flag
protectedinherited

Reference to FEProblemBase.

Definition at line 85 of file SetupInterface.h.

Real& Output::_dt
protectedinherited

Time step delta.

Definition at line 198 of file Output.h.

Referenced by Output::dt(), and PetscOutput::solveSetup().

Real& Output::_dt_old
protectedinherited

Old time step delta.

Definition at line 201 of file Output.h.

Referenced by Output::dtOld(), and Console::writeTimestepInformation().

const bool& MooseObject::_enabled
protectedinherited

Reference to the "enable" InputParaemters, used by Controls for toggling on/off MooseObjects.

Definition at line 117 of file MooseObject.h.

Referenced by MooseObject::enabled().

Real Output::_end_time
protectedinherited

End outputting time.

Definition at line 216 of file Output.h.

Referenced by Output::onInterval().

EquationSystems* Output::_es_ptr
protectedinherited
std::vector<ExecFlagType> SetupInterface::_exec_flags
protectedinherited

execution flag (when is the object executed/evaluated)

Definition at line 82 of file SetupInterface.h.

Referenced by SetupInterface::execBitFlags(), SetupInterface::execFlags(), and SetupInterface::SetupInterface().

MultiMooseEnum Output::_execute_on
protectedinherited

The common Execution types; this is used as the default execution type for everything except system information and input.

Definition at line 186 of file Output.h.

Referenced by AdvancedOutput::AdvancedOutput(), Console::Console(), Output::executeOn(), Console::initialSetup(), Output::Output(), Console::output(), PetscOutput::PetscOutput(), Output::shouldOutput(), and PetscOutput::solveSetup().

bool Output::_initialized
protectedinherited

True if init() has been called.

Definition at line 225 of file Output.h.

Referenced by AdvancedOutput::hasOutputHelper(), Output::initialSetup(), AdvancedOutput::initialSetup(), and Console::output().

const unsigned int Output::_interval
protectedinherited

The output time step interval.

Definition at line 207 of file Output.h.

Referenced by Output::onInterval().

bool Output::_is_advanced
protectedinherited

Flag for advanced output testing.

Definition at line 231 of file Output.h.

Referenced by AdvancedOutput::AdvancedOutput(), and Output::isAdvanced().

PetscInt PetscOutput::_linear_iter
protectedinherited

Current linear iteration returned from PETSc.

Definition at line 57 of file PetscOutput.h.

Referenced by Console::output(), and PetscOutput::petscLinearOutput().

FEProblemBase& MeshChangedInterface::_mci_feproblem
protectedinherited

Reference to FEProblemBase instance.

Definition at line 47 of file MeshChangedInterface.h.

Referenced by MeshChangedInterface::MeshChangedInterface().

const std::string& MooseObject::_name
protectedinherited
PetscInt PetscOutput::_nonlinear_iter
protectedinherited

Current non-linear iteration returned from PETSc.

Definition at line 54 of file PetscOutput.h.

Referenced by Console::output(), and PetscOutput::petscNonlinearOutput().

Real PetscOutput::_norm
protectedinherited

Current norm returned from PETSc.

Definition at line 51 of file PetscOutput.h.

Referenced by Console::output(), PetscOutput::petscLinearOutput(), and PetscOutput::petscNonlinearOutput().

unsigned int Output::_num
protectedinherited

The number of outputs written.

Definition at line 204 of file Output.h.

unsigned int TopResidualDebugOutput::_num_residuals
protected

Number of residuals to display.

Definition at line 89 of file TopResidualDebugOutput.h.

Referenced by output().

const InputParameters& MooseObject::_pars
protectedinherited
FEProblemBase* Output::_problem_ptr
protectedinherited
bool Output::_sequence
protectedinherited

Flag for forcing call to outputSetup() with every call to output() (restartable)

Definition at line 183 of file Output.h.

Real Output::_start_time
protectedinherited

Start outputting time.

Definition at line 213 of file Output.h.

Referenced by Output::onInterval().

bool Output::_sync_only
protectedinherited

Flag for only executing at sync times.

Definition at line 222 of file Output.h.

Referenced by Output::onInterval().

std::set<Real> Output::_sync_times
protectedinherited

Sync times for this outputter.

Definition at line 210 of file Output.h.

Referenced by Output::onInterval().

System& TopResidualDebugOutput::_sys
protected

Reference to libMesh system.

Definition at line 92 of file TopResidualDebugOutput.h.

Referenced by printTopResiduals().

int& Output::_t_step
protectedinherited
Real Output::_t_tol
protectedinherited

Time checking tolerance.

Definition at line 219 of file Output.h.

Referenced by PetscOutput::solveSetup().

Real& Output::_time
protectedinherited
Real& Output::_time_old
protectedinherited

The old time.

Definition at line 192 of file Output.h.

Referenced by PetscOutput::solveSetup(), and Output::timeOld().

bool Output::_transient
protectedinherited

Transient flag (true = transient)

Definition at line 174 of file Output.h.

Referenced by Output::dt(), Output::dtOld(), Output::time(), Output::timeOld(), and Console::writeTimestepInformation().

bool Output::_use_displaced
protectedinherited

Flag for using displaced mesh.

Definition at line 177 of file Output.h.


The documentation for this class was generated from the following files: