libMesh
Public Member Functions | Static Public Member Functions | Protected Types | Protected Member Functions | Protected Attributes | Static Protected Attributes | Private Member Functions | Private Attributes | List of all members
libMesh::AztecLinearSolver< T > Class Template Reference

This class provides an interface to AztecOO iterative solvers that is compatible with the libMesh LinearSolver<> More...

#include <trilinos_aztec_linear_solver.h>

Inheritance diagram for libMesh::AztecLinearSolver< T >:
[legend]

Public Member Functions

 AztecLinearSolver (const libMesh::Parallel::Communicator &comm LIBMESH_CAN_DEFAULT_TO_COMMWORLD)
 Constructor. More...
 
 ~AztecLinearSolver ()
 Destructor. More...
 
virtual void clear () libmesh_override
 Release all memory and clear data structures. More...
 
virtual void init (const char *name=libmesh_nullptr) libmesh_override
 Initialize data structures if not done so already. More...
 
virtual std::pair< unsigned int, Realsolve (SparseMatrix< T > &matrix_in, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) libmesh_override
 Call the Aztec solver. More...
 
virtual std::pair< unsigned int, Realsolve (SparseMatrix< T > &matrix, SparseMatrix< T > &preconditioner, NumericVector< T > &solution, NumericVector< T > &rhs, const double tol, const unsigned int m_its) libmesh_override
 This method allows you to call a linear solver while specifying the matrix to use as the (left) preconditioning matrix. More...
 
virtual std::pair< unsigned int, Realsolve (const ShellMatrix< T > &shell_matrix, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) libmesh_override
 This function solves a system whose matrix is a shell matrix. More...
 
virtual std::pair< unsigned int, Realsolve (const ShellMatrix< T > &shell_matrix, const SparseMatrix< T > &precond_matrix, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) libmesh_override
 This function solves a system whose matrix is a shell matrix, but a sparse matrix is used as preconditioning matrix, this allowing other preconditioners than JACOBI. More...
 
void get_residual_history (std::vector< double > &hist)
 Fills the input vector with the sequence of residual norms from the latest iterative solve. More...
 
Real get_initial_residual ()
 
virtual void print_converged_reason () const libmesh_override
 Prints a useful message about why the latest linear solve con(di)verged. More...
 
virtual LinearConvergenceReason get_converged_reason () const libmesh_override
 
bool initialized () const
 
virtual void init_names (const System &)
 Apply names to the system to be solved. More...
 
SolverType solver_type () const
 
void set_solver_type (const SolverType st)
 Sets the type of solver to use. More...
 
PreconditionerType preconditioner_type () const
 
void set_preconditioner_type (const PreconditionerType pct)
 Sets the type of preconditioner to use. More...
 
void attach_preconditioner (Preconditioner< T > *preconditioner)
 Attaches a Preconditioner object to be used. More...
 
virtual void reuse_preconditioner (bool)
 Set the same_preconditioner flag, which indicates if we reuse the same preconditioner for subsequent solves. More...
 
bool get_same_preconditioner ()
 
virtual void restrict_solve_to (const std::vector< unsigned int > *const dofs, const SubsetSolveMode subset_solve_mode=SUBSET_ZERO)
 After calling this method, all successive solves will be restricted to the given set of dofs, which must contain local dofs on each processor only and not contain any duplicates. More...
 
std::pair< unsigned int, Realsolve (SparseMatrix< T > &matrix, SparseMatrix< T > *precond_matrix, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)
 This function calls the solver "_solver_type" preconditioned with the "_preconditioner_type" preconditioner. More...
 
std::pair< unsigned int, Realsolve (const ShellMatrix< T > &matrix, const SparseMatrix< T > *precond_matrix, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)
 This function solves a system whose matrix is a shell matrix, but an optional sparse matrix may be used as preconditioning matrix. More...
 
virtual std::pair< unsigned int, Realadjoint_solve (SparseMatrix< T > &, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)
 Function to solve the adjoint system. More...
 
void set_solver_configuration (SolverConfiguration &solver_configuration)
 Set the solver configuration object. More...
 
const Parallel::Communicatorcomm () const
 
processor_id_type n_processors () const
 
processor_id_type processor_id () const
 

Static Public Member Functions

static UniquePtr< LinearSolver< T > > build (const libMesh::Parallel::Communicator &comm_in, const SolverPackage solver_package=libMesh::default_solver_package())
 Builds a LinearSolver using the linear solver package specified by solver_package. More...
 
static std::string get_info ()
 Gets a string containing the reference information. More...
 
static void print_info (std::ostream &out=libMesh::out)
 Prints the reference information, by default to libMesh::out. More...
 
static unsigned int n_objects ()
 Prints the number of outstanding (created, but not yet destroyed) objects. More...
 
static void enable_print_counter_info ()
 Methods to enable/disable the reference counter output from print_info() More...
 
static void disable_print_counter_info ()
 

Protected Types

typedef std::map< std::string, std::pair< unsigned int, unsigned int > > Counts
 Data structure to log the information. More...
 

Protected Member Functions

void increment_constructor_count (const std::string &name)
 Increments the construction counter. More...
 
void increment_destructor_count (const std::string &name)
 Increments the destruction counter. More...
 

Protected Attributes

SolverType _solver_type
 Enum stating which type of iterative solver to use. More...
 
PreconditionerType _preconditioner_type
 Enum stating with type of preconditioner to use. More...
 
bool _is_initialized
 Flag indicating if the data structures have been initialized. More...
 
Preconditioner< T > * _preconditioner
 Holds the Preconditioner object to be used for the linear solves. More...
 
bool same_preconditioner
 Boolean flag to indicate whether we want to use an identical preconditioner to the previous solve. More...
 
SolverConfiguration_solver_configuration
 Optionally store a SolverOptions object that can be used to set parameters like solver type, tolerances and iteration limits. More...
 
const Parallel::Communicator_communicator
 

Static Protected Attributes

static Counts _counts
 Actually holds the data. More...
 
static Threads::atomic< unsigned int_n_objects
 The number of objects. More...
 
static Threads::spin_mutex _mutex
 Mutual exclusion object to enable thread-safe reference counting. More...
 
static bool _enable_print_counter = true
 Flag to control whether reference count information is printed when print_info is called. More...
 

Private Member Functions

void set_solver_type ()
 Tells AztecOO to use the user-specified solver stored in _solver_type. More...
 

Private Attributes

Epetra_LinearProblem * _linear_problem
 The Epetra linear problem object. More...
 
AztecOO * _linear_solver
 The AztecOO solver object. More...
 

Detailed Description

template<typename T>
class libMesh::AztecLinearSolver< T >

This class provides an interface to AztecOO iterative solvers that is compatible with the libMesh LinearSolver<>

Author
Benjamin Kirk
Date
2002-2008

Definition at line 51 of file trilinos_aztec_linear_solver.h.

Member Typedef Documentation

typedef std::map<std::string, std::pair<unsigned int, unsigned int> > libMesh::ReferenceCounter::Counts
protectedinherited

Data structure to log the information.

The log is identified by the class name.

Definition at line 119 of file reference_counter.h.

Constructor & Destructor Documentation

template<typename T >
libMesh::AztecLinearSolver< T >::AztecLinearSolver ( const libMesh::Parallel::Communicator &comm  LIBMESH_CAN_DEFAULT_TO_COMMWORLD)

Constructor.

Initializes Aztec data structures

Definition at line 176 of file trilinos_aztec_linear_solver.h.

References libMesh::LinearSolver< T >::_preconditioner_type, libMesh::BLOCK_JACOBI_PRECOND, libMesh::ILU_PRECOND, and libMesh::ParallelObject::n_processors().

176  :
177  LinearSolver<T>(comm)
178 {
179  if (this->n_processors() == 1)
181  else
183 }
processor_id_type n_processors() const
const Parallel::Communicator & comm() const
PreconditionerType _preconditioner_type
Enum stating with type of preconditioner to use.
template<typename T >
libMesh::AztecLinearSolver< T >::~AztecLinearSolver ( )

Destructor.

Definition at line 189 of file trilinos_aztec_linear_solver.h.

References libMesh::AztecLinearSolver< T >::clear().

190 {
191  this->clear ();
192 }
virtual void clear() libmesh_override
Release all memory and clear data structures.

Member Function Documentation

template<typename T>
std::pair< unsigned int, Real > libMesh::LinearSolver< T >::adjoint_solve ( SparseMatrix< T > &  mat,
NumericVector< T > &  sol,
NumericVector< T > &  rhs,
const double  tol,
const unsigned int  n_iter 
)
virtualinherited

Function to solve the adjoint system.

Note
This method will compute the preconditioner from the system matrix. This is not a pure virtual function and is defined linear_solver.C

Reimplemented in libMesh::PetscLinearSolver< T >, libMesh::PetscLinearSolver< Number >, libMesh::LaspackLinearSolver< T >, and libMesh::EigenSparseLinearSolver< T >.

Definition at line 130 of file linear_solver.C.

References libMesh::SparseMatrix< T >::close(), and libMesh::SparseMatrix< T >::get_transpose().

Referenced by libMesh::ImplicitSystem::adjoint_solve(), and libMesh::LinearSolver< Number >::set_solver_type().

135 {
136  // Log how long the linear solve takes.
137  LOG_SCOPE("adjoint_solve()", "LinearSolver");
138 
139  // Take the discrete adjoint
140  mat.close();
141  mat.get_transpose(mat);
142 
143  // Call the solve function for the relevant linear algebra library and
144  // solve the transpose matrix
145  const std::pair<unsigned int, Real> totalrval = this->solve (mat, sol, rhs, tol, n_iter);
146 
147  // Now transpose back and restore the original matrix
148  // by taking the discrete adjoint
149  mat.get_transpose(mat);
150 
151  return totalrval;
152 }
virtual std::pair< unsigned int, Real > solve(SparseMatrix< T > &, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)=0
This function calls the solver _solver_type preconditioned with the _preconditioner_type precondition...
template<typename T>
void libMesh::LinearSolver< T >::attach_preconditioner ( Preconditioner< T > *  preconditioner)
inherited

Attaches a Preconditioner object to be used.

Definition at line 103 of file linear_solver.C.

References libMesh::libMeshPrivateData::_is_initialized, and libMesh::SHELL_PRECOND.

Referenced by libMesh::LinearSolver< Number >::set_solver_type().

104 {
105  if (this->_is_initialized)
106  libmesh_error_msg("Preconditioner must be attached before the solver is initialized!");
107 
109  _preconditioner = preconditioner;
110 }
Preconditioner< T > * _preconditioner
Holds the Preconditioner object to be used for the linear solves.
PreconditionerType _preconditioner_type
Enum stating with type of preconditioner to use.
bool _is_initialized
Flag indicating if the data structures have been initialized.
template<typename T >
UniquePtr< LinearSolver< T > > libMesh::LinearSolver< T >::build ( const libMesh::Parallel::Communicator comm_in,
const SolverPackage  solver_package = libMesh::default_solver_package() 
)
staticinherited

Builds a LinearSolver using the linear solver package specified by solver_package.

Definition at line 42 of file linear_solver.C.

References libMesh::EIGEN_SOLVERS, libMesh::LASPACK_SOLVERS, libMesh::libmesh_ignore(), libMesh::PETSC_SOLVERS, and libMesh::TRILINOS_SOLVERS.

Referenced by libMesh::ImplicitSystem::get_linear_solver(), and libMesh::TimeSolver::init().

44 {
45  // Avoid unused parameter warnings when no solver packages are enabled.
47 
48  // Build the appropriate solver
49  switch (solver_package)
50  {
51 #ifdef LIBMESH_HAVE_LASPACK
52  case LASPACK_SOLVERS:
53  return UniquePtr<LinearSolver<T>>(new LaspackLinearSolver<T>(comm));
54 #endif
55 
56 
57 #ifdef LIBMESH_HAVE_PETSC
58  case PETSC_SOLVERS:
59  return UniquePtr<LinearSolver<T>>(new PetscLinearSolver<T>(comm));
60 #endif
61 
62 
63 #ifdef LIBMESH_TRILINOS_HAVE_AZTECOO
64  case TRILINOS_SOLVERS:
65  return UniquePtr<LinearSolver<T>>(new AztecLinearSolver<T>(comm));
66 #endif
67 
68 
69 #ifdef LIBMESH_HAVE_EIGEN
70  case EIGEN_SOLVERS:
71  return UniquePtr<LinearSolver<T>>(new EigenSparseLinearSolver<T>(comm));
72 #endif
73 
74  default:
75  libmesh_error_msg("ERROR: Unrecognized solver package: " << solver_package);
76  }
77 
78  return UniquePtr<LinearSolver<T>>();
79 }
void libmesh_ignore(const T &)
const Parallel::Communicator & comm() const
template<typename T >
void libMesh::AztecLinearSolver< T >::clear ( )
virtual

Release all memory and clear data structures.

Reimplemented from libMesh::LinearSolver< T >.

Definition at line 40 of file trilinos_aztec_linear_solver.C.

References libMesh::libMeshPrivateData::_is_initialized, libMesh::BLOCK_JACOBI_PRECOND, libMesh::GMRES, libMesh::ILU_PRECOND, libMesh::initialized(), and libMesh::n_processors().

Referenced by libMesh::AztecLinearSolver< T >::~AztecLinearSolver().

41 {
42  if (this->initialized())
43  {
44  this->_is_initialized = false;
45 
46  // Mimic PETSc default solver and preconditioner
47  this->_solver_type = GMRES;
48 
49  if (this->n_processors() == 1)
51  else
53  }
54 }
SolverType _solver_type
Enum stating which type of iterative solver to use.
bool initialized() const
Definition: linear_solver.h:85
processor_id_type n_processors() const
PreconditionerType _preconditioner_type
Enum stating with type of preconditioner to use.
bool _is_initialized
Flag indicating if the data structures have been initialized.
const Parallel::Communicator& libMesh::ParallelObject::comm ( ) const
inherited
Returns
A reference to the Parallel::Communicator object used by this mesh.

Definition at line 87 of file parallel_object.h.

References libMesh::ParallelObject::_communicator.

Referenced by libMesh::__libmesh_petsc_diff_solver_monitor(), libMesh::__libmesh_petsc_diff_solver_residual(), libMesh::__libmesh_petsc_preconditioner_apply(), libMesh::__libmesh_petsc_snes_jacobian(), libMesh::__libmesh_petsc_snes_postcheck(), libMesh::__libmesh_petsc_snes_residual(), libMesh::__libmesh_tao_equality_constraints(), libMesh::__libmesh_tao_equality_constraints_jacobian(), libMesh::__libmesh_tao_gradient(), libMesh::__libmesh_tao_hessian(), libMesh::__libmesh_tao_inequality_constraints(), libMesh::__libmesh_tao_inequality_constraints_jacobian(), libMesh::__libmesh_tao_objective(), libMesh::MeshRefinement::_coarsen_elements(), libMesh::ExactSolution::_compute_error(), libMesh::ParmetisPartitioner::_do_repartition(), libMesh::UniformRefinementEstimator::_estimate_error(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_get_diagonal(), libMesh::SlepcEigenSolver< T >::_petsc_shell_matrix_get_diagonal(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_mult(), libMesh::SlepcEigenSolver< T >::_petsc_shell_matrix_mult(), libMesh::PetscLinearSolver< T >::_petsc_shell_matrix_mult_add(), libMesh::EquationSystems::_read_impl(), libMesh::MeshRefinement::_refine_elements(), libMesh::MeshRefinement::_smooth_flags(), add_cube_convex_hull_to_mesh(), libMesh::TransientRBConstruction::add_IC_to_RB_space(), libMesh::ImplicitSystem::add_matrix(), libMesh::RBConstruction::add_scaled_matrix_and_vector(), libMesh::System::add_vector(), libMesh::EigenSparseLinearSolver< T >::adjoint_solve(), libMesh::UnstructuredMesh::all_second_order(), libMesh::MeshTools::Modification::all_tri(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::TransientRBConstruction::allocate_data_structures(), libMesh::RBConstruction::allocate_data_structures(), libMesh::TransientRBConstruction::assemble_affine_expansion(), libMesh::FEMSystem::assemble_qoi(), libMesh::MeshCommunication::assign_global_indices(), libMesh::ParmetisPartitioner::assign_partitioning(), libMesh::DofMap::attach_matrix(), libMesh::Parallel::BinSorter< KeyType, IdxType >::binsort(), libMesh::Parallel::Sort< KeyType, IdxType >::binsort(), libMesh::MeshCommunication::broadcast(), libMesh::SparseMatrix< T >::build(), libMesh::MeshTools::Generation::build_extrusion(), libMesh::Parallel::Histogram< KeyType, IdxType >::build_histogram(), libMesh::PetscNonlinearSolver< T >::build_mat_null_space(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::EquationSystems::build_parallel_solution_vector(), libMesh::MeshBase::cache_elem_dims(), libMesh::System::calculate_norm(), libMesh::DofMap::check_dirichlet_bcid_consistency(), libMesh::Parallel::Sort< KeyType, IdxType >::communicate_bins(), libMesh::RBConstruction::compute_Fq_representor_innerprods(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::RBConstruction::compute_output_dual_innerprods(), libMesh::RBSCMConstruction::compute_SCM_bounds_on_training_set(), libMesh::Problem_Interface::computeF(), libMesh::Problem_Interface::computeJacobian(), libMesh::Problem_Interface::computePreconditioner(), libMesh::ExodusII_IO::copy_elemental_solution(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::MeshTools::create_bounding_box(), libMesh::MeshTools::create_nodal_bounding_box(), libMesh::MeshRefinement::create_parent_error_vector(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::MeshTools::create_subdomain_bounding_box(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), DMlibMeshFunction(), DMlibMeshJacobian(), DMlibMeshSetSystem_libMesh(), DMVariableBounds_libMesh(), libMesh::MeshRefinement::eliminate_unrefined_patches(), libMesh::RBEIMConstruction::enrich_RB_space(), libMesh::TransientRBConstruction::enrich_RB_space(), libMesh::RBConstruction::enrich_RB_space(), AssembleOptimization::equality_constraints(), libMesh::WeightedPatchRecoveryErrorEstimator::estimate_error(), libMesh::JumpErrorEstimator::estimate_error(), libMesh::PatchRecoveryErrorEstimator::estimate_error(), libMesh::AdjointRefinementEstimator::estimate_error(), libMesh::ExactErrorEstimator::estimate_error(), libMesh::RBEIMConstruction::evaluate_mesh_function(), libMesh::MeshRefinement::flag_elements_by_elem_fraction(), libMesh::MeshRefinement::flag_elements_by_error_fraction(), libMesh::MeshRefinement::flag_elements_by_nelem_target(), libMesh::MeshCommunication::gather(), libMesh::MeshCommunication::gather_neighboring_elements(), libMesh::MeshfreeInterpolation::gather_remote_data(), libMesh::CondensedEigenSystem::get_eigenpair(), libMesh::DofMap::get_info(), libMesh::ImplicitSystem::get_linear_solver(), libMesh::EquationSystems::get_solution(), AssembleOptimization::inequality_constraints(), AssembleOptimization::inequality_constraints_jacobian(), libMesh::LocationMap< T >::init(), libMesh::TopologyMap::init(), libMesh::PetscDiffSolver::init(), libMesh::TimeSolver::init(), libMesh::TaoOptimizationSolver< T >::init(), libMesh::PetscNonlinearSolver< T >::init(), libMesh::SystemSubsetBySubdomain::init(), libMesh::EigenSystem::init_data(), libMesh::EigenSystem::init_matrices(), libMesh::ParmetisPartitioner::initialize(), libMesh::OptimizationSystem::initialize_equality_constraints_storage(), libMesh::OptimizationSystem::initialize_inequality_constraints_storage(), libMesh::RBEIMConstruction::initialize_rb_construction(), integrate_function(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_flags(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_p_levels(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::MeshTools::libmesh_assert_valid_unique_ids(), libMesh::MeshRefinement::limit_level_mismatch_at_edge(), libMesh::MeshRefinement::limit_level_mismatch_at_node(), libMesh::MeshRefinement::limit_overrefined_boundary(), libMesh::MeshRefinement::limit_underrefined_boundary(), main(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshCommunication::make_elems_parallel_consistent(), libMesh::MeshRefinement::make_flags_parallel_consistent(), libMesh::MeshCommunication::make_new_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_new_nodes_parallel_consistent(), libMesh::MeshCommunication::make_node_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_proc_ids_parallel_consistent(), libMesh::MeshCommunication::make_node_unique_ids_parallel_consistent(), libMesh::MeshCommunication::make_nodes_parallel_consistent(), libMesh::MeshCommunication::make_p_levels_parallel_consistent(), libMesh::MeshRefinement::make_refinement_compatible(), libMesh::TransientRBConstruction::mass_matrix_scaled_matvec(), libMesh::FEMSystem::mesh_position_set(), libMesh::MeshSerializer::MeshSerializer(), LinearElasticityWithContact::move_mesh(), libMesh::DistributedMesh::n_active_elem(), libMesh::MeshTools::n_active_levels(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::CondensedEigenSystem::n_global_non_condensed_dofs(), libMesh::MeshTools::n_levels(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::MeshTools::n_p_levels(), libMesh::BoundaryInfo::n_shellface_conds(), new_function_base(), libMesh::DistributedMesh::parallel_max_elem_id(), libMesh::DistributedMesh::parallel_max_node_id(), libMesh::ReplicatedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_max_unique_id(), libMesh::DistributedMesh::parallel_n_elem(), libMesh::DistributedMesh::parallel_n_nodes(), libMesh::SparsityPattern::Build::parallel_sync(), libMesh::MeshTools::paranoid_n_levels(), libMesh::Partitioner::partition(), libMesh::MetisPartitioner::partition_range(), libMesh::Partitioner::partition_unpartitioned_elements(), libMesh::petsc_auto_fieldsplit(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::MeshBase::prepare_for_use(), libMesh::SparseMatrix< T >::print(), FEMParameters::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::XdrIO::read(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::MeshBase::recalculate_n_partitions(), libMesh::MeshCommunication::redistribute(), libMesh::MeshRefinement::refine_and_coarsen_elements(), libMesh::DistributedMesh::renumber_dof_objects(), LinearElasticityWithContact::residual_and_jacobian(), libMesh::MeshCommunication::send_coarse_ghosts(), libMesh::TransientRBConstruction::set_error_temporal_data(), libMesh::RBEIMConstruction::set_explicit_sys_subvector(), libMesh::Partitioner::set_node_processor_ids(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::Partitioner::set_parent_processor_ids(), libMesh::LaplaceMeshSmoother::smooth(), libMesh::Parallel::Sort< KeyType, IdxType >::sort(), libMesh::MeshBase::subdomain_ids(), libMesh::BoundaryInfo::sync(), libMesh::Parallel::sync_element_data_by_parent_id(), libMesh::Parallel::sync_node_data_by_element_id(), libMesh::MeshRefinement::test_level_one(), MeshfunctionDFEM::test_mesh_function_dfem(), MeshfunctionDFEM::test_mesh_function_dfem_grad(), libMesh::MeshRefinement::test_unflagged(), PointLocatorTest::testLocator(), BoundaryInfoTest::testMesh(), SystemsTest::testProjectCubeWithMeshFunction(), libMesh::MeshTools::total_weight(), libMesh::MeshFunctionSolutionTransfer::transfer(), libMesh::MeshfreeSolutionTransfer::transfer(), libMesh::TransientRBConstruction::truth_assembly(), libMesh::RBConstruction::truth_assembly(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::TransientRBConstruction::update_RB_initial_condition_all_N(), libMesh::RBEIMConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_RB_system_matrices(), libMesh::RBConstruction::update_RB_system_matrices(), libMesh::TransientRBConstruction::update_residual_terms(), libMesh::RBConstruction::update_residual_terms(), libMesh::NameBasedIO::write(), libMesh::XdrIO::write(), libMesh::RBEvaluation::write_out_vectors(), libMesh::TransientRBConstruction::write_riesz_representors_to_files(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::RBDataSerialization::RBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::TransientRBEvaluationSerialization::write_to_file(), libMesh::RBDataSerialization::RBEIMEvaluationSerialization::write_to_file(), and libMesh::RBDataSerialization::RBSCMEvaluationSerialization::write_to_file().

88  { return _communicator; }
const Parallel::Communicator & _communicator
void libMesh::ReferenceCounter::disable_print_counter_info ( )
staticinherited

Definition at line 107 of file reference_counter.C.

References libMesh::ReferenceCounter::_enable_print_counter.

Referenced by libMesh::LibMeshInit::LibMeshInit(), and libMesh::ReferenceCounter::n_objects().

108 {
109  _enable_print_counter = false;
110  return;
111 }
static bool _enable_print_counter
Flag to control whether reference count information is printed when print_info is called...
void libMesh::ReferenceCounter::enable_print_counter_info ( )
staticinherited

Methods to enable/disable the reference counter output from print_info()

Definition at line 101 of file reference_counter.C.

References libMesh::ReferenceCounter::_enable_print_counter.

Referenced by libMesh::ReferenceCounter::n_objects().

102 {
103  _enable_print_counter = true;
104  return;
105 }
static bool _enable_print_counter
Flag to control whether reference count information is printed when print_info is called...
template<typename T >
LinearConvergenceReason libMesh::AztecLinearSolver< T >::get_converged_reason ( ) const
virtual
Returns
The solver's convergence flag

Implements libMesh::LinearSolver< T >.

Definition at line 219 of file trilinos_aztec_linear_solver.C.

References libMesh::CONVERGED_RTOL_NORMAL, libMesh::DIVERGED_ITS, and libMesh::DIVERGED_NULL.

Referenced by libMesh::AztecLinearSolver< T >::solve().

220 {
221  const double *status = _linear_solver->GetAztecStatus();
222 
223  switch (static_cast<int>(status[AZ_why]))
224  {
225  case AZ_normal :
226  return CONVERGED_RTOL_NORMAL;
227  case AZ_maxits :
228  return DIVERGED_ITS;
229  }
230  return DIVERGED_NULL;
231 }
MPI_Status status
Status object for querying messages.
Definition: parallel.h:176
AztecOO * _linear_solver
The AztecOO solver object.
std::string libMesh::ReferenceCounter::get_info ( )
staticinherited

Gets a string containing the reference information.

Definition at line 47 of file reference_counter.C.

References libMesh::ReferenceCounter::_counts, and libMesh::Quality::name().

Referenced by libMesh::ReferenceCounter::print_info().

48 {
49 #if defined(LIBMESH_ENABLE_REFERENCE_COUNTING) && defined(DEBUG)
50 
51  std::ostringstream oss;
52 
53  oss << '\n'
54  << " ---------------------------------------------------------------------------- \n"
55  << "| Reference count information |\n"
56  << " ---------------------------------------------------------------------------- \n";
57 
58  for (Counts::iterator it = _counts.begin();
59  it != _counts.end(); ++it)
60  {
61  const std::string name(it->first);
62  const unsigned int creations = it->second.first;
63  const unsigned int destructions = it->second.second;
64 
65  oss << "| " << name << " reference count information:\n"
66  << "| Creations: " << creations << '\n'
67  << "| Destructions: " << destructions << '\n';
68  }
69 
70  oss << " ---------------------------------------------------------------------------- \n";
71 
72  return oss.str();
73 
74 #else
75 
76  return "";
77 
78 #endif
79 }
std::string name(const ElemQuality q)
This function returns a string containing some name for q.
Definition: elem_quality.C:39
static Counts _counts
Actually holds the data.
template<typename T >
Real libMesh::AztecLinearSolver< T >::get_initial_residual ( )
Returns
The initial residual for the solve just completed with this interface.

Use this method instead of the one above if you just want the starting residual and not the entire history.

Definition at line 178 of file trilinos_aztec_linear_solver.C.

Referenced by libMesh::AztecLinearSolver< T >::solve().

179 {
180  return _linear_solver->TrueResidual();
181 }
AztecOO * _linear_solver
The AztecOO solver object.
template<typename T >
void libMesh::AztecLinearSolver< T >::get_residual_history ( std::vector< double > &  hist)

Fills the input vector with the sequence of residual norms from the latest iterative solve.

Definition at line 169 of file trilinos_aztec_linear_solver.C.

Referenced by libMesh::AztecLinearSolver< T >::solve().

170 {
171  libmesh_not_implemented();
172 }
template<typename T >
bool libMesh::LinearSolver< T >::get_same_preconditioner ( )
inherited
Returns
same_preconditioner, which indicates if we reuse the same preconditioner for subsequent solves.

Definition at line 326 of file linear_solver.h.

References libMesh::LinearSolver< T >::same_preconditioner.

Referenced by libMesh::LinearSolver< Number >::set_solver_type().

327 {
328  return same_preconditioner;
329 }
bool same_preconditioner
Boolean flag to indicate whether we want to use an identical preconditioner to the previous solve...
void libMesh::ReferenceCounter::increment_constructor_count ( const std::string &  name)
protectedinherited

Increments the construction counter.

Should be called in the constructor of any derived class that will be reference counted.

Definition at line 185 of file reference_counter.h.

References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCounter::n_objects(), and libMesh::ReferenceCountedObject< RBParametrized >::ReferenceCountedObject().

186 {
187  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
188  std::pair<unsigned int, unsigned int> & p = _counts[name];
189 
190  p.first++;
191 }
std::string name(const ElemQuality q)
This function returns a string containing some name for q.
Definition: elem_quality.C:39
spin_mutex spin_mtx
A convenient spin mutex object which can be used for obtaining locks.
Definition: threads.C:29
static Counts _counts
Actually holds the data.
void libMesh::ReferenceCounter::increment_destructor_count ( const std::string &  name)
protectedinherited

Increments the destruction counter.

Should be called in the destructor of any derived class that will be reference counted.

Definition at line 198 of file reference_counter.h.

References libMesh::ReferenceCounter::_counts, libMesh::Quality::name(), and libMesh::Threads::spin_mtx.

Referenced by libMesh::ReferenceCounter::n_objects(), and libMesh::ReferenceCountedObject< RBParametrized >::~ReferenceCountedObject().

199 {
200  Threads::spin_mutex::scoped_lock lock(Threads::spin_mtx);
201  std::pair<unsigned int, unsigned int> & p = _counts[name];
202 
203  p.second++;
204 }
std::string name(const ElemQuality q)
This function returns a string containing some name for q.
Definition: elem_quality.C:39
spin_mutex spin_mtx
A convenient spin mutex object which can be used for obtaining locks.
Definition: threads.C:29
static Counts _counts
Actually holds the data.
template<typename T >
void libMesh::AztecLinearSolver< T >::init ( const char *  name = libmesh_nullptr)
virtual

Initialize data structures if not done so already.

Implements libMesh::LinearSolver< T >.

Definition at line 59 of file trilinos_aztec_linear_solver.C.

References libMesh::libMeshPrivateData::_is_initialized, libMesh::BLOCK_JACOBI_PRECOND, libMesh::ICC_PRECOND, libMesh::ILU_PRECOND, libMesh::initialized(), and libMesh::LU_PRECOND.

60 {
61  // Initialize the data structures if not done so already.
62  if (!this->initialized())
63  {
64  this->_is_initialized = true;
65 
66  _linear_solver = new AztecOO();
67 
69 
70  switch(this->_preconditioner_type)
71  {
72  case ILU_PRECOND:
73  _linear_solver->SetAztecOption(AZ_precond,AZ_dom_decomp);
74  _linear_solver->SetAztecOption(AZ_subdomain_solve,AZ_ilu);
75  break;
76 
78  _linear_solver->SetAztecOption(AZ_precond,AZ_Jacobi);
79  break;
80 
81  case ICC_PRECOND:
82  _linear_solver->SetAztecOption(AZ_precond,AZ_dom_decomp);
83  _linear_solver->SetAztecOption(AZ_subdomain_solve,AZ_icc);
84  break;
85 
86  case LU_PRECOND:
87  _linear_solver->SetAztecOption(AZ_precond,AZ_dom_decomp);
88  _linear_solver->SetAztecOption(AZ_subdomain_solve,AZ_lu);
89  break;
90 
91  default:
92  _linear_solver->SetAztecOption(AZ_precond,AZ_dom_decomp);
93  _linear_solver->SetAztecOption(AZ_subdomain_solve,AZ_ilu);
94  }
95  }
96 }
bool initialized() const
Definition: linear_solver.h:85
void set_solver_type()
Tells AztecOO to use the user-specified solver stored in _solver_type.
PreconditionerType _preconditioner_type
Enum stating with type of preconditioner to use.
AztecOO * _linear_solver
The AztecOO solver object.
bool _is_initialized
Flag indicating if the data structures have been initialized.
template<typename T>
virtual void libMesh::LinearSolver< T >::init_names ( const System )
virtualinherited

Apply names to the system to be solved.

For most packages this is a no-op; for PETSc this sets an option prefix from the system name and sets field names from the system's variable names.

Since field names are applied to DoF numberings, this method must be called again after any System reinit.

Reimplemented in libMesh::PetscLinearSolver< T >, and libMesh::PetscLinearSolver< Number >.

Definition at line 106 of file linear_solver.h.

106 {}
template<typename T>
bool libMesh::LinearSolver< T >::initialized ( ) const
inherited
Returns
true if the data structures are initialized, false otherwise.

Definition at line 85 of file linear_solver.h.

Referenced by libMesh::EigenSparseLinearSolver< T >::clear(), and libMesh::EigenSparseLinearSolver< T >::init().

85 { return _is_initialized; }
bool _is_initialized
Flag indicating if the data structures have been initialized.
static unsigned int libMesh::ReferenceCounter::n_objects ( )
staticinherited
processor_id_type libMesh::ParallelObject::n_processors ( ) const
inherited
Returns
The number of processors in the group.

Definition at line 93 of file parallel_object.h.

References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::size().

Referenced by libMesh::ParmetisPartitioner::_do_repartition(), libMesh::BoundaryInfo::_find_id_maps(), libMesh::DistributedMesh::add_elem(), libMesh::DistributedMesh::add_node(), libMesh::LaplaceMeshSmoother::allgather_graph(), libMesh::FEMSystem::assembly(), libMesh::ParmetisPartitioner::assign_partitioning(), libMesh::AztecLinearSolver< T >::AztecLinearSolver(), libMesh::MeshCommunication::broadcast(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::DistributedMesh::clear(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::UnstructuredMesh::create_pid_mesh(), libMesh::MeshTools::create_processor_bounding_box(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::DistributedMesh::DistributedMesh(), libMesh::EnsightIO::EnsightIO(), libMesh::MeshCommunication::gather(), libMesh::MeshCommunication::gather_neighboring_elements(), libMesh::MeshBase::get_info(), libMesh::EquationSystems::get_solution(), libMesh::SystemSubsetBySubdomain::init(), libMesh::ParmetisPartitioner::initialize(), libMesh::Nemesis_IO_Helper::initialize(), libMesh::DistributedMesh::insert_elem(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_topology_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_boundary_ids(), libMesh::MeshTools::libmesh_assert_valid_dof_ids(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::MeshTools::libmesh_assert_valid_refinement_flags(), libMesh::DofMap::local_variable_indices(), libMesh::MeshRefinement::make_coarsening_compatible(), libMesh::MeshBase::n_active_elem_on_proc(), libMesh::MeshBase::n_elem_on_proc(), libMesh::MeshBase::n_nodes_on_proc(), libMesh::SparsityPattern::Build::parallel_sync(), libMesh::Partitioner::partition(), libMesh::MeshBase::partition(), libMesh::Partitioner::partition_unpartitioned_elements(), libMesh::PetscLinearSolver< T >::PetscLinearSolver(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::SparseMatrix< T >::print(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::CheckpointIO::read_connectivity(), libMesh::XdrIO::read_header(), libMesh::CheckpointIO::read_nodes(), libMesh::MeshCommunication::redistribute(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::Partitioner::repartition(), libMesh::MeshCommunication::send_coarse_ghosts(), libMesh::Partitioner::set_node_processor_ids(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::Parallel::Sort< KeyType, IdxType >::sort(), WriteVecAndScalar::testWrite(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::GMVIO::write_binary(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), and libMesh::XdrIO::write_serialized_nodesets().

94  { return cast_int<processor_id_type>(_communicator.size()); }
unsigned int size() const
Definition: parallel.h:726
const Parallel::Communicator & _communicator
template<typename T >
PreconditionerType libMesh::LinearSolver< T >::preconditioner_type ( ) const
inherited
Returns
The type of preconditioner to use.

Definition at line 83 of file linear_solver.C.

Referenced by libMesh::LinearSolver< Number >::set_solver_type().

84 {
85  if (_preconditioner)
86  return _preconditioner->type();
87 
88  return _preconditioner_type;
89 }
Preconditioner< T > * _preconditioner
Holds the Preconditioner object to be used for the linear solves.
PreconditionerType _preconditioner_type
Enum stating with type of preconditioner to use.
template<typename T >
void libMesh::AztecLinearSolver< T >::print_converged_reason ( ) const
virtual

Prints a useful message about why the latest linear solve con(di)verged.

Reimplemented from libMesh::LinearSolver< T >.

Definition at line 186 of file trilinos_aztec_linear_solver.C.

References libMesh::out.

Referenced by libMesh::AztecLinearSolver< T >::solve().

187 {
188  const double *status = _linear_solver->GetAztecStatus();
189 
190  switch (static_cast<int>(status[AZ_why]))
191  {
192  case AZ_normal :
193  libMesh::out << "AztecOO converged.\n";
194  break;
195  case AZ_maxits :
196  libMesh::out << "AztecOO failed to converge within maximum iterations.\n";
197  break;
198  case AZ_param :
199  libMesh::out << "AztecOO failed to support a user-requested parameter.\n";
200  break;
201  case AZ_breakdown :
202  libMesh::out << "AztecOO encountered numerical breakdown.\n";
203  break;
204  case AZ_loss :
205  libMesh::out << "AztecOO encountered numerical loss of precision.\n";
206  break;
207  case AZ_ill_cond :
208  libMesh::out << "AztecOO encountered an ill-conditioned GMRES Hessian.\n";
209  break;
210  default:
211  libMesh::out << "AztecOO reported an unrecognized condition.\n";
212  break;
213  }
214 }
MPI_Status status
Status object for querying messages.
Definition: parallel.h:176
OStreamProxy out
AztecOO * _linear_solver
The AztecOO solver object.
void libMesh::ReferenceCounter::print_info ( std::ostream &  out = libMesh::out)
staticinherited

Prints the reference information, by default to libMesh::out.

Definition at line 88 of file reference_counter.C.

References libMesh::ReferenceCounter::_enable_print_counter, and libMesh::ReferenceCounter::get_info().

Referenced by libMesh::LibMeshInit::LibMeshInit().

89 {
91  out_stream << ReferenceCounter::get_info();
92 }
static std::string get_info()
Gets a string containing the reference information.
static bool _enable_print_counter
Flag to control whether reference count information is printed when print_info is called...
processor_id_type libMesh::ParallelObject::processor_id ( ) const
inherited
Returns
The rank of this processor in the group.

Definition at line 99 of file parallel_object.h.

References libMesh::ParallelObject::_communicator, and libMesh::Parallel::Communicator::rank().

Referenced by libMesh::BoundaryInfo::_find_id_maps(), libMesh::EquationSystems::_read_impl(), libMesh::DistributedMesh::add_elem(), libMesh::BoundaryInfo::add_elements(), libMesh::DofMap::add_neighbors_to_send_list(), libMesh::DistributedMesh::add_node(), libMesh::MeshRefinement::add_node(), libMesh::MeshTools::Modification::all_tri(), libMesh::FEMSystem::assembly(), libMesh::ParmetisPartitioner::assign_partitioning(), libMesh::MeshCommunication::broadcast(), libMesh::EquationSystems::build_discontinuous_solution_vector(), libMesh::Nemesis_IO_Helper::build_element_and_node_maps(), libMesh::ParmetisPartitioner::build_graph(), libMesh::InfElemBuilder::build_inf_elem(), libMesh::BoundaryInfo::build_node_list_from_side_list(), libMesh::DofMap::build_sparsity(), libMesh::DistributedMesh::clear(), libMesh::ExodusII_IO_Helper::close(), libMesh::Nemesis_IO_Helper::compute_border_node_ids(), libMesh::Nemesis_IO_Helper::compute_communication_map_parameters(), libMesh::Nemesis_IO_Helper::compute_internal_and_border_elems_and_internal_nodes(), libMesh::RBConstruction::compute_max_error_bound(), libMesh::Nemesis_IO_Helper::compute_node_communication_maps(), libMesh::Nemesis_IO_Helper::compute_num_global_elem_blocks(), libMesh::Nemesis_IO_Helper::compute_num_global_nodesets(), libMesh::Nemesis_IO_Helper::compute_num_global_sidesets(), libMesh::Nemesis_IO_Helper::construct_nemesis_filename(), libMesh::MeshTools::correct_node_proc_ids(), libMesh::ExodusII_IO_Helper::create(), libMesh::DistributedMesh::delete_elem(), libMesh::DistributedMesh::delete_node(), libMesh::MeshCommunication::delete_remote_elements(), libMesh::DofMap::distribute_dofs(), libMesh::DofMap::distribute_local_dofs_node_major(), libMesh::DofMap::distribute_local_dofs_var_major(), libMesh::DistributedMesh::DistributedMesh(), libMesh::EnsightIO::EnsightIO(), libMesh::RBEIMConstruction::evaluate_mesh_function(), libMesh::MeshFunction::find_element(), libMesh::MeshFunction::find_elements(), libMesh::UnstructuredMesh::find_neighbors(), libMesh::MeshCommunication::gather(), libMesh::MeshCommunication::gather_neighboring_elements(), libMesh::Nemesis_IO_Helper::get_cmap_params(), libMesh::Nemesis_IO_Helper::get_eb_info_global(), libMesh::Nemesis_IO_Helper::get_elem_cmap(), libMesh::Nemesis_IO_Helper::get_elem_map(), libMesh::MeshBase::get_info(), libMesh::DofMap::get_info(), libMesh::Nemesis_IO_Helper::get_init_global(), libMesh::Nemesis_IO_Helper::get_init_info(), libMesh::Nemesis_IO_Helper::get_loadbal_param(), libMesh::Nemesis_IO_Helper::get_node_cmap(), libMesh::Nemesis_IO_Helper::get_node_map(), libMesh::Nemesis_IO_Helper::get_ns_param_global(), libMesh::EquationSystems::get_solution(), libMesh::Nemesis_IO_Helper::get_ss_param_global(), libMesh::SparsityPattern::Build::handle_vi_vj(), libMesh::SystemSubsetBySubdomain::init(), HeatSystem::init_data(), libMesh::ParmetisPartitioner::initialize(), libMesh::ExodusII_IO_Helper::initialize(), libMesh::ExodusII_IO_Helper::initialize_element_variables(), libMesh::ExodusII_IO_Helper::initialize_global_variables(), libMesh::ExodusII_IO_Helper::initialize_nodal_variables(), libMesh::DistributedMesh::insert_elem(), libMesh::DofMap::is_evaluable(), libMesh::SparsityPattern::Build::join(), libMesh::TransientRBEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEIMEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEvaluation::legacy_write_offline_data_to_files(), libMesh::RBSCMEvaluation::legacy_write_offline_data_to_files(), libMesh::RBEIMEvaluation::legacy_write_out_interpolation_points_elem(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Elem >(), libMesh::MeshTools::libmesh_assert_parallel_consistent_procids< Node >(), libMesh::MeshTools::libmesh_assert_valid_neighbors(), libMesh::DistributedMesh::libmesh_assert_valid_parallel_object_ids(), libMesh::DofMap::local_variable_indices(), main(), libMesh::MeshRefinement::make_coarsening_compatible(), AugmentSparsityOnInterface::mesh_reinit(), libMesh::MeshBase::n_active_local_elem(), libMesh::BoundaryInfo::n_boundary_conds(), libMesh::BoundaryInfo::n_edge_conds(), libMesh::System::n_local_dofs(), libMesh::MeshBase::n_local_elem(), libMesh::MeshBase::n_local_nodes(), libMesh::BoundaryInfo::n_nodeset_conds(), libMesh::BoundaryInfo::n_shellface_conds(), libMesh::WeightedPatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::SparsityPattern::Build::operator()(), libMesh::PatchRecoveryErrorEstimator::EstimateError::operator()(), libMesh::SparsityPattern::Build::parallel_sync(), libMesh::MetisPartitioner::partition_range(), libMesh::System::point_gradient(), libMesh::System::point_hessian(), libMesh::System::point_value(), libMesh::SparseMatrix< T >::print(), libMesh::NumericVector< T >::print_global(), libMesh::Nemesis_IO_Helper::put_cmap_params(), libMesh::Nemesis_IO_Helper::put_elem_cmap(), libMesh::Nemesis_IO_Helper::put_elem_map(), libMesh::Nemesis_IO_Helper::put_loadbal_param(), libMesh::Nemesis_IO_Helper::put_node_cmap(), libMesh::Nemesis_IO_Helper::put_node_map(), libMesh::NameBasedIO::read(), libMesh::Nemesis_IO::read(), libMesh::CheckpointIO::read(), libMesh::XdrIO::read(), libMesh::ExodusII_IO_Helper::read_elem_num_map(), libMesh::CheckpointIO::read_header(), libMesh::XdrIO::read_header(), libMesh::RBEvaluation::read_in_vectors_from_multiple_files(), libMesh::ExodusII_IO_Helper::read_node_num_map(), libMesh::TransientRBConstruction::read_riesz_representors_from_files(), libMesh::RBConstruction::read_riesz_representors_from_files(), libMesh::XdrIO::read_serialized_bc_names(), libMesh::XdrIO::read_serialized_bcs_helper(), libMesh::XdrIO::read_serialized_connectivity(), libMesh::XdrIO::read_serialized_nodes(), libMesh::XdrIO::read_serialized_nodesets(), libMesh::XdrIO::read_serialized_subdomain_names(), libMesh::MeshCommunication::redistribute(), libMesh::DistributedMesh::renumber_dof_objects(), libMesh::MeshCommunication::send_coarse_ghosts(), libMesh::Partitioner::set_node_processor_ids(), libMesh::DofMap::set_nonlocal_dof_objects(), libMesh::LaplaceMeshSmoother::smooth(), DefaultCouplingTest::testCoupling(), PointNeighborCouplingTest::testCoupling(), BoundaryInfoTest::testShellFaceConstraints(), WriteVecAndScalar::testWrite(), libMesh::MeshTools::total_weight(), libMesh::MeshRefinement::uniformly_coarsen(), libMesh::Parallel::Packing< Node * >::unpack(), libMesh::Parallel::Packing< Elem * >::unpack(), libMesh::DistributedMesh::update_parallel_id_counts(), libMesh::DTKAdapter::update_variable_values(), libMesh::MeshTools::weight(), libMesh::NameBasedIO::write(), libMesh::CheckpointIO::write(), libMesh::XdrIO::write(), libMesh::EquationSystems::write(), libMesh::GMVIO::write_discontinuous_gmv(), libMesh::ExodusII_IO::write_element_data(), libMesh::ExodusII_IO_Helper::write_element_values(), libMesh::ExodusII_IO_Helper::write_elements(), libMesh::ExodusII_IO::write_global_data(), libMesh::ExodusII_IO_Helper::write_global_values(), libMesh::ExodusII_IO::write_information_records(), libMesh::ExodusII_IO_Helper::write_information_records(), libMesh::ExodusII_IO_Helper::write_nodal_coordinates(), libMesh::UCDIO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data(), libMesh::ExodusII_IO::write_nodal_data_discontinuous(), libMesh::ExodusII_IO_Helper::write_nodal_values(), libMesh::Nemesis_IO_Helper::write_nodesets(), libMesh::ExodusII_IO_Helper::write_nodesets(), libMesh::RBEvaluation::write_out_vectors(), write_output_solvedata(), libMesh::RBConstruction::write_riesz_representors_to_files(), libMesh::XdrIO::write_serialized_bc_names(), libMesh::XdrIO::write_serialized_bcs_helper(), libMesh::XdrIO::write_serialized_connectivity(), libMesh::XdrIO::write_serialized_nodes(), libMesh::XdrIO::write_serialized_nodesets(), libMesh::XdrIO::write_serialized_subdomain_names(), libMesh::Nemesis_IO_Helper::write_sidesets(), libMesh::ExodusII_IO_Helper::write_sidesets(), libMesh::ExodusII_IO::write_timestep(), and libMesh::ExodusII_IO_Helper::write_timestep().

100  { return cast_int<processor_id_type>(_communicator.rank()); }
const Parallel::Communicator & _communicator
unsigned int rank() const
Definition: parallel.h:724
template<typename T >
void libMesh::LinearSolver< T >::restrict_solve_to ( const std::vector< unsigned int > *const  dofs,
const SubsetSolveMode  subset_solve_mode = SUBSET_ZERO 
)
virtualinherited

After calling this method, all successive solves will be restricted to the given set of dofs, which must contain local dofs on each processor only and not contain any duplicates.

This mode can be disabled by calling this method with dofs being a NULL pointer.

Reimplemented in libMesh::PetscLinearSolver< T >, and libMesh::PetscLinearSolver< Number >.

Definition at line 121 of file linear_solver.C.

References libmesh_nullptr.

Referenced by libMesh::LinearSolver< Number >::set_solver_type().

123 {
124  if (dofs != libmesh_nullptr)
125  libmesh_not_implemented();
126 }
const class libmesh_nullptr_t libmesh_nullptr
template<typename T >
void libMesh::LinearSolver< T >::reuse_preconditioner ( bool  reuse_flag)
virtualinherited

Set the same_preconditioner flag, which indicates if we reuse the same preconditioner for subsequent solves.

Definition at line 114 of file linear_solver.C.

Referenced by libMesh::ImplicitSystem::disable_cache(), libMesh::RBConstruction::initialize_rb_construction(), main(), and libMesh::LinearSolver< Number >::set_solver_type().

115 {
116  same_preconditioner = reuse_flag;
117 }
bool same_preconditioner
Boolean flag to indicate whether we want to use an identical preconditioner to the previous solve...
template<typename T >
void libMesh::LinearSolver< T >::set_preconditioner_type ( const PreconditionerType  pct)
inherited

Sets the type of preconditioner to use.

Definition at line 93 of file linear_solver.C.

Referenced by libMesh::LinearSolver< Number >::set_solver_type().

94 {
95  if (_preconditioner)
96  _preconditioner->set_type(pct);
97  else
99 }
Preconditioner< T > * _preconditioner
Holds the Preconditioner object to be used for the linear solves.
PreconditionerType _preconditioner_type
Enum stating with type of preconditioner to use.
template<typename T >
void libMesh::LinearSolver< T >::set_solver_configuration ( SolverConfiguration solver_configuration)
inherited

Set the solver configuration object.

Definition at line 162 of file linear_solver.C.

Referenced by libMesh::LinearSolver< Number >::set_solver_type().

163 {
164  _solver_configuration = &solver_configuration;
165 }
SolverConfiguration * _solver_configuration
Optionally store a SolverOptions object that can be used to set parameters like solver type...
template<typename T>
void libMesh::LinearSolver< T >::set_solver_type ( const SolverType  st)
inherited

Sets the type of solver to use.

Definition at line 116 of file linear_solver.h.

Referenced by main().

117  { _solver_type = st; }
SolverType _solver_type
Enum stating which type of iterative solver to use.
template<typename T >
void libMesh::AztecLinearSolver< T >::set_solver_type ( )
private

Tells AztecOO to use the user-specified solver stored in _solver_type.

Definition at line 236 of file trilinos_aztec_linear_solver.C.

References libMesh::BICGSTAB, libMesh::CG, libMesh::CGS, libMesh::Utility::enum_to_string(), libMesh::err, libMesh::GMRES, and libMesh::TFQMR.

Referenced by libMesh::AztecLinearSolver< T >::solve().

237 {
238  switch (this->_solver_type)
239  {
240  case CG:
241  _linear_solver->SetAztecOption(AZ_solver, AZ_cg); return;
242 
243  case CGS:
244  _linear_solver->SetAztecOption(AZ_solver, AZ_cgs); return;
245 
246  case TFQMR:
247  _linear_solver->SetAztecOption(AZ_solver, AZ_tfqmr); return;
248 
249  case BICGSTAB:
250  _linear_solver->SetAztecOption(AZ_solver, AZ_bicgstab); return;
251 
252  case GMRES:
253  _linear_solver->SetAztecOption(AZ_solver, AZ_gmres); return;
254 
255  default:
256  libMesh::err << "ERROR: Unsupported AztecOO Solver: "
257  << Utility::enum_to_string(this->_solver_type) << std::endl
258  << "Continuing with AztecOO defaults" << std::endl;
259  }
260 }
OStreamProxy err
SolverType _solver_type
Enum stating which type of iterative solver to use.
std::string enum_to_string(const T e)
AztecOO * _linear_solver
The AztecOO solver object.
template<typename T >
virtual std::pair<unsigned int, Real> libMesh::AztecLinearSolver< T >::solve ( SparseMatrix< T > &  matrix_in,
NumericVector< T > &  solution_in,
NumericVector< T > &  rhs_in,
const double  tol,
const unsigned int  m_its 
)
virtual

Call the Aztec solver.

It calls the method below, using the same matrix for the system and preconditioner matrices.

Implements libMesh::LinearSolver< T >.

Definition at line 80 of file trilinos_aztec_linear_solver.h.

References libMesh::AztecLinearSolver< T >::get_converged_reason(), libMesh::AztecLinearSolver< T >::get_initial_residual(), libMesh::AztecLinearSolver< T >::get_residual_history(), libMesh::AztecLinearSolver< T >::print_converged_reason(), libMesh::Real, and libMesh::AztecLinearSolver< T >::set_solver_type().

85  {
86  return this->solve(matrix_in, matrix_in, solution_in, rhs_in, tol, m_its);
87  }
virtual std::pair< unsigned int, Real > solve(SparseMatrix< T > &matrix_in, NumericVector< T > &solution_in, NumericVector< T > &rhs_in, const double tol, const unsigned int m_its) libmesh_override
Call the Aztec solver.
template<typename T >
std::pair< unsigned int, Real > libMesh::AztecLinearSolver< T >::solve ( SparseMatrix< T > &  matrix,
SparseMatrix< T > &  preconditioner,
NumericVector< T > &  solution,
NumericVector< T > &  rhs,
const double  tol,
const unsigned int  m_its 
)
virtual

This method allows you to call a linear solver while specifying the matrix to use as the (left) preconditioning matrix.

Note
The linear solver will not compute a preconditioner in this case, and will instead premultiply by the matrix you provide.

Implements libMesh::LinearSolver< T >.

Definition at line 103 of file trilinos_aztec_linear_solver.C.

References libMesh::TriangleWrapper::init().

109 {
110  LOG_SCOPE("solve()", "AztecLinearSolver");
111 
112  // Make sure the data passed in are really of Epetra types
113  EpetraMatrix<T> * matrix = cast_ptr<EpetraMatrix<T> *>(&matrix_in);
114  EpetraMatrix<T> * precond = cast_ptr<EpetraMatrix<T> *>(&precond_in);
115  EpetraVector<T> * solution = cast_ptr<EpetraVector<T> *>(&solution_in);
116  EpetraVector<T> * rhs = cast_ptr<EpetraVector<T> *>(&rhs_in);
117 
118  this->init();
119 
120  // Close the matrices and vectors in case this wasn't already done.
121  matrix->close ();
122  precond->close ();
123  solution->close ();
124  rhs->close ();
125 
126  _linear_solver->SetAztecOption(AZ_max_iter,m_its);
127  _linear_solver->SetAztecParam(AZ_tol,tol);
128 
129  Epetra_FECrsMatrix * emat = matrix->mat();
130  Epetra_Vector * esol = solution->vec();
131  Epetra_Vector * erhs = rhs->vec();
132 
133  _linear_solver->Iterate(emat, esol, erhs, m_its, tol);
134 
135  // return the # of its. and the final residual norm.
136  return std::make_pair(_linear_solver->NumIters(), _linear_solver->TrueResidual());
137 }
virtual void init(const char *name=libmesh_nullptr) libmesh_override
Initialize data structures if not done so already.
AztecOO * _linear_solver
The AztecOO solver object.
template<typename T >
std::pair< unsigned int, Real > libMesh::AztecLinearSolver< T >::solve ( const ShellMatrix< T > &  shell_matrix,
NumericVector< T > &  solution_in,
NumericVector< T > &  rhs_in,
const double  tol,
const unsigned int  m_its 
)
virtual

This function solves a system whose matrix is a shell matrix.

Implements libMesh::LinearSolver< T >.

Definition at line 143 of file trilinos_aztec_linear_solver.C.

148 {
149  libmesh_not_implemented();
150 }
template<typename T >
std::pair< unsigned int, Real > libMesh::AztecLinearSolver< T >::solve ( const ShellMatrix< T > &  shell_matrix,
const SparseMatrix< T > &  precond_matrix,
NumericVector< T > &  solution_in,
NumericVector< T > &  rhs_in,
const double  tol,
const unsigned int  m_its 
)
virtual

This function solves a system whose matrix is a shell matrix, but a sparse matrix is used as preconditioning matrix, this allowing other preconditioners than JACOBI.

Implements libMesh::LinearSolver< T >.

Definition at line 156 of file trilinos_aztec_linear_solver.C.

162 {
163  libmesh_not_implemented();
164 }
template<typename T>
std::pair< unsigned int, Real > libMesh::LinearSolver< T >::solve ( SparseMatrix< T > &  matrix,
SparseMatrix< T > *  precond_matrix,
NumericVector< T > &  sol,
NumericVector< T > &  rhs,
const double  tol,
const unsigned int  n_iter 
)
inherited

This function calls the solver "_solver_type" preconditioned with the "_preconditioner_type" preconditioner.

The preconditioning matrix is used if it is provided, or the system matrix is used if precond_matrix is null

Definition at line 334 of file linear_solver.h.

References libMesh::LinearSolver< T >::solve().

340 {
341  if (pc_mat)
342  return this->solve(mat, *pc_mat, sol, rhs, tol, n_iter);
343  else
344  return this->solve(mat, sol, rhs, tol, n_iter);
345 }
virtual std::pair< unsigned int, Real > solve(SparseMatrix< T > &, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)=0
This function calls the solver _solver_type preconditioned with the _preconditioner_type precondition...
template<typename T>
std::pair< unsigned int, Real > libMesh::LinearSolver< T >::solve ( const ShellMatrix< T > &  matrix,
const SparseMatrix< T > *  precond_matrix,
NumericVector< T > &  sol,
NumericVector< T > &  rhs,
const double  tol,
const unsigned int  n_iter 
)
inherited

This function solves a system whose matrix is a shell matrix, but an optional sparse matrix may be used as preconditioning matrix.

Definition at line 351 of file linear_solver.h.

References libMesh::LinearSolver< T >::solve().

357 {
358  if (pc_mat)
359  return this->solve(mat, *pc_mat, sol, rhs, tol, n_iter);
360  else
361  return this->solve(mat, sol, rhs, tol, n_iter);
362 }
virtual std::pair< unsigned int, Real > solve(SparseMatrix< T > &, NumericVector< T > &, NumericVector< T > &, const double, const unsigned int)=0
This function calls the solver _solver_type preconditioned with the _preconditioner_type precondition...
template<typename T>
SolverType libMesh::LinearSolver< T >::solver_type ( ) const
inherited
Returns
The type of solver to use.

Definition at line 111 of file linear_solver.h.

111 { return _solver_type; }
SolverType _solver_type
Enum stating which type of iterative solver to use.

Member Data Documentation

const Parallel::Communicator& libMesh::ParallelObject::_communicator
protectedinherited
ReferenceCounter::Counts libMesh::ReferenceCounter::_counts
staticprotectedinherited
bool libMesh::ReferenceCounter::_enable_print_counter = true
staticprotectedinherited

Flag to control whether reference count information is printed when print_info is called.

Definition at line 143 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::disable_print_counter_info(), libMesh::ReferenceCounter::enable_print_counter_info(), and libMesh::ReferenceCounter::print_info().

template<typename T>
bool libMesh::LinearSolver< T >::_is_initialized
protectedinherited

Flag indicating if the data structures have been initialized.

Definition at line 276 of file linear_solver.h.

Referenced by libMesh::EigenSparseLinearSolver< T >::clear(), libMesh::EigenSparseLinearSolver< T >::init(), and libMesh::LinearSolver< Number >::initialized().

template<typename T >
Epetra_LinearProblem* libMesh::AztecLinearSolver< T >::_linear_problem
private

The Epetra linear problem object.

Definition at line 164 of file trilinos_aztec_linear_solver.h.

template<typename T >
AztecOO* libMesh::AztecLinearSolver< T >::_linear_solver
private

The AztecOO solver object.

Definition at line 169 of file trilinos_aztec_linear_solver.h.

Threads::spin_mutex libMesh::ReferenceCounter::_mutex
staticprotectedinherited

Mutual exclusion object to enable thread-safe reference counting.

Definition at line 137 of file reference_counter.h.

Threads::atomic< unsigned int > libMesh::ReferenceCounter::_n_objects
staticprotectedinherited

The number of objects.

Print the reference count information when the number returns to 0.

Definition at line 132 of file reference_counter.h.

Referenced by libMesh::ReferenceCounter::n_objects(), libMesh::ReferenceCounter::ReferenceCounter(), and libMesh::ReferenceCounter::~ReferenceCounter().

template<typename T>
Preconditioner<T>* libMesh::LinearSolver< T >::_preconditioner
protectedinherited

Holds the Preconditioner object to be used for the linear solves.

Definition at line 281 of file linear_solver.h.

template<typename T>
PreconditionerType libMesh::LinearSolver< T >::_preconditioner_type
protectedinherited
template<typename T>
SolverConfiguration* libMesh::LinearSolver< T >::_solver_configuration
protectedinherited

Optionally store a SolverOptions object that can be used to set parameters like solver type, tolerances and iteration limits.

Definition at line 295 of file linear_solver.h.

Referenced by libMesh::EigenSparseLinearSolver< T >::solve().

template<typename T>
SolverType libMesh::LinearSolver< T >::_solver_type
protectedinherited
template<typename T>
bool libMesh::LinearSolver< T >::same_preconditioner
protectedinherited

Boolean flag to indicate whether we want to use an identical preconditioner to the previous solve.

This can save substantial work in the cases where the system matrix is the same for successive solves.

Definition at line 289 of file linear_solver.h.

Referenced by libMesh::LinearSolver< T >::get_same_preconditioner().


The documentation for this class was generated from the following files: